Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G9399_RS25590 Genome accession   NZ_CP054160
Coordinates   5590017..5591540 (+) Length   507 a.a.
NCBI ID   WP_065683943.1    Uniprot ID   A0A1C7WC04
Organism   Serratia fonticola strain HH13     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5585017..5596540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9399_RS25565 (G9399_00800) ilvE 5585220..5586146 (-) 927 WP_021181823.1 branched-chain-amino-acid transaminase -
  G9399_RS25570 (G9399_00795) ilvM 5586168..5586425 (-) 258 WP_021181824.1 acetolactate synthase 2 small subunit -
  G9399_RS25575 (G9399_00790) ilvG 5586422..5588068 (-) 1647 WP_024527666.1 acetolactate synthase 2 catalytic subunit -
  G9399_RS25580 (G9399_00785) ilvL 5588210..5588308 (-) 99 WP_071681478.1 ilv operon leader peptide -
  G9399_RS25585 (G9399_00780) - 5588442..5589674 (-) 1233 WP_065683944.1 MFS transporter -
  G9399_RS25590 (G9399_00775) comM 5590017..5591540 (+) 1524 WP_065683943.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G9399_RS25595 (G9399_00770) - 5591569..5591907 (-) 339 WP_021181829.1 DUF413 domain-containing protein -
  G9399_RS25600 (G9399_00765) hdfR 5592027..5592854 (+) 828 WP_065683942.1 HTH-type transcriptional regulator HdfR -
  G9399_RS25605 (G9399_00760) yjfF 5592859..5593851 (-) 993 WP_037376500.1 galactofuranose ABC transporter, permease protein YjfF -
  G9399_RS25610 (G9399_00755) ytfT 5593848..5594849 (-) 1002 WP_186580151.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  G9399_RS25615 (G9399_00750) ytfR 5594867..5596381 (-) 1515 WP_065683940.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54615.94 Da        Isoelectric Point: 8.0945

>NTDB_id=451217 G9399_RS25590 WP_065683943.1 5590017..5591540(+) (comM) [Serratia fonticola strain HH13]
MSLAVIYTRATIGVQAPSVMVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLAHYEFLGELALSGALRAVHGAIPAAIAAAEAKRELILAAANGKEAGLLPNSTTRVAEHL
LEVCAFLQGKGDLPIAVAPPAAATSTETADLQEVIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLNGLLPPLSD
REALESVAVASLLHHPDETLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVRFPARVQLIAAMNPSPTGHYQGIHNRTPPQQILRYLGRLSGPFLDRFDLSIEVPLLPPGVLAKQHHA
GESSQQVRQRVLVAREQQLARAGKVNALLSNREVDRDCHLPATEAEFLEKTLSQLGLSVRAWHRILKVARTLADLAGEQQ
IDKRHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=451217 G9399_RS25590 WP_065683943.1 5590017..5591540(+) (comM) [Serratia fonticola strain HH13]
ATGTCACTGGCAGTAATCTATACCCGTGCCACGATCGGCGTGCAGGCGCCTTCGGTCATGGTTGAAGTCCATATCAGCAA
CGGATTACCCGGCCTTACCCTGGTCGGCCTGCCGGAAACCACGGTGAAAGAAGCCCGTGACCGGGTGCGCAGCGCACTGA
TCAACAACGGCTTCACTTTTCCGGCCAAACGCATCACCGTCAATCTGGCACCGGCCGATTTGCCTAAGGAAGGGGGGCGC
TATGATTTACCCATTGCGCTGGCCATTCTGGCGGCCTCAGAGCAGCTGCCAGCAGATAAGTTGGCGCACTATGAGTTCCT
GGGTGAATTAGCGCTTTCTGGCGCATTGAGGGCGGTGCACGGCGCCATTCCGGCGGCAATAGCGGCAGCCGAGGCCAAGC
GGGAGTTGATCCTGGCTGCGGCCAACGGCAAAGAGGCGGGGTTGCTTCCCAACAGCACGACCCGAGTCGCAGAACATTTA
CTGGAGGTGTGCGCTTTTTTGCAGGGTAAGGGGGATCTGCCGATCGCCGTAGCGCCTCCTGCGGCTGCCACGTCAACGGA
AACTGCCGACCTGCAGGAAGTCATTGGCCAGGAACAGGCAAAGCGAGCGTTGGAAATTGCCGCGGCCGGGGGCCACAACC
TGTTGCTGCTTGGCCCCCCGGGCACCGGCAAAACCATGCTGGCCAGCCGCCTCAATGGCTTGCTGCCGCCGTTAAGCGAT
CGGGAGGCGCTGGAAAGCGTCGCCGTTGCCAGCTTACTGCATCATCCAGATGAAACCCTGCCATGGCGCCAGCGGCCGTT
TCGTGCCCCACACCACAGCGCCTCGATGGCTGCCCTGGTTGGGGGAGGTTCCTTGCCACGGCCAGGGGAAATCTCCATGG
CGCACAACGGCGTACTGTTTCTGGATGAATTACCCGAATTTGAACGGCGAGTATTAGATGCGCTGCGTGAGCCGCTGGAA
TCCGGTGAAATCGTCATCTCACGCGCCAGCGCCAAGGTACGCTTCCCTGCCCGAGTGCAGCTGATTGCGGCGATGAACCC
CAGCCCAACCGGGCACTATCAGGGCATACACAACCGCACGCCACCGCAGCAGATTTTGCGCTACCTCGGCAGGCTCTCTG
GCCCCTTCCTCGATCGATTTGATTTGTCGATTGAGGTGCCGCTGCTGCCACCGGGCGTACTGGCCAAGCAGCACCATGCG
GGGGAAAGCAGCCAACAGGTACGTCAACGGGTGCTGGTGGCGCGCGAACAGCAGCTGGCACGGGCAGGTAAAGTGAATGC
GCTGTTGAGTAACCGCGAGGTGGATCGGGATTGCCATTTGCCTGCAACTGAAGCGGAGTTTTTAGAGAAAACGCTGAGCC
AACTGGGATTATCGGTTCGAGCCTGGCATCGCATCCTGAAAGTGGCACGCACGCTGGCCGATTTGGCAGGGGAACAACAG
ATTGATAAACGCCATCTCAGCGAAGCGCTCAGCTATCGCAGTATGGATCGCCTGCTGCTGCAGCTACACCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7WC04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.403

99.803

0.663
  comM Vibrio cholerae strain A1552

66.135

99.014

0.655
  comM Glaesserella parasuis strain SC1401

64.892

100

0.649
  comM Vibrio campbellii strain DS40M4

64.94

99.014

0.643
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.882

100

0.462