Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRV88_RS21800 Genome accession   NZ_CP054129
Coordinates   4571567..4572082 (-) Length   171 a.a.
NCBI ID   WP_235125821.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain BY9F36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4566567..4577082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRV88_RS21780 (HRV88_21720) soxR 4568209..4568667 (-) 459 WP_003826630.1 redox-sensitive transcriptional activator SoxR -
  HRV88_RS21785 (HRV88_21725) soxS 4568754..4569077 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  HRV88_RS21790 (HRV88_21730) - 4569080..4570666 (-) 1587 WP_008786928.1 EAL domain-containing protein -
  HRV88_RS21795 (HRV88_21735) - 4571219..4571500 (+) 282 WP_003826625.1 YjcB family protein -
  HRV88_RS21800 (HRV88_21740) ssb 4571567..4572082 (-) 516 WP_235125821.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HRV88_RS21805 (HRV88_21745) uvrA 4572334..4575156 (+) 2823 WP_003826619.1 excinuclease ABC subunit UvrA -
  HRV88_RS21810 (HRV88_21750) - 4575729..4576085 (-) 357 WP_008786927.1 MmcQ/YjbR family DNA-binding protein -
  HRV88_RS21815 (HRV88_21755) aphA 4576213..4576926 (-) 714 WP_003826615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18382.38 Da        Isoelectric Point: 5.2456

>NTDB_id=450956 HRV88_RS21800 WP_235125821.1 4571567..4572082(-) (ssb) [Citrobacter portucalensis strain BY9F36]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPSNE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=450956 HRV88_RS21800 WP_235125821.1 4571567..4572082(-) (ssb) [Citrobacter portucalensis strain BY9F36]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGTTGTTTGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGTAGAAAAGTACACCACAGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAACAGTCAGCGCCGTCTAACGAG
CCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.419

100

0.789
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.608
  ssb Neisseria meningitidis MC58

46.629

100

0.485
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.485
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.374