Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HQ912_RS26380 Genome accession   NZ_CP054128
Coordinates   5945171..5946235 (-) Length   354 a.a.
NCBI ID   WP_173407470.1    Uniprot ID   -
Organism   Pseudomonas sp. MPDS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5940171..5951235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ912_RS26355 (HQ912_26355) aroK 5940851..5941369 (-) 519 WP_003196983.1 shikimate kinase AroK -
  HQ912_RS26360 (HQ912_26360) pilQ 5941374..5943446 (-) 2073 WP_047225964.1 type IV pilus secretin PilQ Machinery gene
  HQ912_RS26365 (HQ912_26365) - 5943443..5943988 (-) 546 WP_173407469.1 pilus assembly protein PilP -
  HQ912_RS26370 (HQ912_26370) pilO 5943985..5944608 (-) 624 WP_047225966.1 type 4a pilus biogenesis protein PilO -
  HQ912_RS26375 (HQ912_26375) - 5944605..5945171 (-) 567 WP_047225967.1 PilN domain-containing protein -
  HQ912_RS26380 (HQ912_26380) comM 5945171..5946235 (-) 1065 WP_173407470.1 pilus assembly protein PilM Machinery gene
  HQ912_RS26385 (HQ912_26385) - 5946442..5948886 (+) 2445 WP_173407570.1 penicillin-binding protein 1A -
  HQ912_RS26390 (HQ912_26390) - 5949143..5950411 (-) 1269 WP_047225970.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38055.54 Da        Isoelectric Point: 4.9070

>NTDB_id=450935 HQ912_RS26380 WP_173407470.1 5945171..5946235(-) (comM) [Pseudomonas sp. MPDS]
MLRLFNKKAHTLLGIDISSTSVKLLELSRQGDRYRVESYAVEPLPANAVVEKNIAELEGVGQALSRVLAKARTPLRNVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDFEVLGVSPRSAERVEVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERAFGLLATQLAASQERLTVAVIDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLSP
EQAGQAKKQGGLPDDYLGEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGTASVAGLDRLIEQRLGTSTQVANP
FSNMALGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=450935 HQ912_RS26380 WP_173407470.1 5945171..5946235(-) (comM) [Pseudomonas sp. MPDS]
GTGCTACGACTCTTCAATAAAAAAGCCCATACGCTTTTGGGGATAGACATCAGTTCCACGTCGGTGAAGCTGCTCGAGTT
GAGCCGCCAGGGTGACCGCTACCGTGTCGAGTCTTACGCGGTCGAGCCGTTGCCGGCCAACGCCGTGGTCGAAAAGAACA
TCGCCGAGCTCGAGGGCGTGGGCCAGGCATTGTCACGGGTGCTCGCCAAGGCCAGAACACCCTTGCGTAACGTGGCGGTG
GCTGTAGCGGGGTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGACTTTCCGACGACGACATGGAAAACCAGCT
CAAGATCGAAGCCGATCAATACATTCCTTATCCGCTGGACGAGGTGGCCATCGACTTCGAAGTCCTGGGCGTTTCACCGC
GCAGCGCCGAGCGGGTCGAGGTGCTGTTGGCCGCCTGTCGCAAGGAAAACGTCGAAGTTCGCGAGGCTGCGCTGGCGCTC
GCCGGGCTCACGGCCAAGGTGGTCGATGTGGAGGCCTACGCGCTGGAGCGCGCCTTCGGGCTGCTTGCCACGCAACTGGC
CGCGTCCCAGGAGCGGCTGACGGTGGCGGTGATCGACATCGGCGCCACCATGACCACCCTGAGCGTGCTGCATAACGGGC
GCATCATCTATACCCGCGAACAATTGTTCGGCGGTCGCCAGCTCACCGAAGAAATCCAGCGCCGCTACGGCCTGTCACCC
GAGCAGGCCGGGCAGGCAAAGAAGCAGGGTGGCCTGCCGGACGATTACCTCGGTGAGGTCCTGCAACCTTTTCGCGAGGC
CCTGGTGCAACAGGTATCGAGGTCCTTGCAGTTTTTCTTCGCCTCGGGCCAGTACAGTGCGGTGGACCACATCCTCTTGG
CTGGAGGCACCGCCTCGGTCGCGGGCCTGGACCGGCTGATCGAACAGCGCCTGGGCACGTCGACCCAGGTGGCCAACCCG
TTTTCCAACATGGCCCTGGGCAGCAAGGTCAACGCCGGTGCCCTGGCCAGTGACGCACCGGCCTTGATGATTGCCTGCGG
GCTGGCCCTCAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.78

100

0.568
  pilM Acinetobacter baumannii D1279779

56.497

100

0.565
  comM Acinetobacter baylyi ADP1

55.085

100

0.551
  pilM Legionella pneumophila strain ERS1305867

48.023

100

0.48