Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6H00_RS21015 Genome accession   NZ_CP065615
Coordinates   4182594..4183727 (+) Length   377 a.a.
NCBI ID   WP_197939747.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_943     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4177594..4188727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H00_RS20990 (I6H00_20990) mscL 4177924..4178130 (-) 207 Protein_4147 large conductance mechanosensitive channel protein MscL -
  I6H00_RS20995 (I6H00_20995) trkA 4178260..4179636 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  I6H00_RS21000 (I6H00_21000) rsmB 4179658..4180947 (-) 1290 WP_197939745.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  I6H00_RS21005 (I6H00_21005) fmt 4180993..4181940 (-) 948 WP_197939746.1 methionyl-tRNA formyltransferase -
  I6H00_RS21010 (I6H00_21010) def 4181955..4182464 (-) 510 WP_000114984.1 peptide deformylase -
  I6H00_RS21015 (I6H00_21015) dprA 4182594..4183727 (+) 1134 WP_197939747.1 DNA-protecting protein DprA Machinery gene
  I6H00_RS21020 (I6H00_21020) - 4183765..4184608 (+) 844 Protein_4153 IS5 family transposase -
  I6H00_RS21025 (I6H00_21025) smg 4184622..4185080 (+) 459 WP_001310134.1 DUF494 family protein Smg -
  I6H00_RS21030 (I6H00_21030) yrdD 4185109..4185651 (+) 543 WP_001129723.1 type I DNA topoisomerase -
  I6H00_RS21035 (I6H00_21035) tsaC 4185656..4186228 (+) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  I6H00_RS21040 (I6H00_21040) aroE 4186233..4187051 (+) 819 WP_000451211.1 shikimate dehydrogenase -
  I6H00_RS21045 (I6H00_21045) yrdB 4187048..4187305 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  I6H00_RS21050 (I6H00_21050) yrdA 4187281..4187835 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41343.49 Da        Isoelectric Point: 6.4987

>NTDB_id=450341 I6H00_RS21015 WP_197939747.1 4182594..4183727(+) (dprA) [Escherichia coli strain FDAARGOS_943]
MVDTDIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTRLCPLII

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=450341 I6H00_RS21015 WP_197939747.1 4182594..4183727(+) (dprA) [Escherichia coli strain FDAARGOS_943]
ATGGTCGATACAGATATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CCACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAACGGACTTAATACCATTCATCCGCGCCGCCATGCCCGACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCACTTGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGTTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGACCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAGGCTGTGTC
CCTTAATCATCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

97.878

0.475
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.652

99.204

0.443
  dprA Vibrio cholerae strain A1552

44.652

99.204

0.443
  dprA Haemophilus influenzae Rd KW20

44.807

89.39

0.401
  dprA Glaesserella parasuis strain SC1401

44.807

89.39

0.401
  dprA Legionella pneumophila strain ERS1305867

44.242

87.533

0.387