Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FOC63_RS06530 Genome accession   NZ_CP054015
Coordinates   1282978..1283640 (+) Length   220 a.a.
NCBI ID   WP_009853576.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1277978..1288640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS06505 (FOC63_06505) - 1278094..1279494 (+) 1401 WP_009853572.1 Cof-type HAD-IIB family hydrolase -
  FOC63_RS06510 (FOC63_06510) - 1279494..1279850 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  FOC63_RS06515 (FOC63_06515) cysK 1279964..1280893 (-) 930 WP_009853573.1 cysteine synthase A -
  FOC63_RS06520 (FOC63_06520) - 1280997..1281623 (-) 627 WP_009853574.1 YigZ family protein -
  FOC63_RS06525 (FOC63_06525) comFA/cflA 1281680..1282981 (+) 1302 WP_009853575.1 DEAD/DEAH box helicase Machinery gene
  FOC63_RS06530 (FOC63_06530) comFC/cflB 1282978..1283640 (+) 663 WP_009853576.1 ComF family protein Machinery gene
  FOC63_RS06535 (FOC63_06535) hpf 1283716..1284264 (+) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25632.68 Da        Isoelectric Point: 9.1649

>NTDB_id=450162 FOC63_RS06530 WP_009853576.1 1282978..1283640(+) (comFC/cflB) [Streptococcus gallolyticus strain FDAARGOS_755]
MICLLCGQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDVYCPNCCRNGFSQQCPDCQAWEKQHHHVSHEALFTYNS
SMKDYFSKYKFQGDILLSHVFSKELKQALKKYKNYTFVPVPISPKRLKERQFNQVTALLQAAKISYEDLLIKREISKQSD
KTRKERLETLNPFSLKNVSKVPENVLIIDDIYTTGATLKGIYQLFYENGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=450162 FOC63_RS06530 WP_009853576.1 1282978..1283640(+) (comFC/cflB) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGATTTGCCTGCTCTGCGGACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTCATCTTAATGAAGAAAGATGACAA
CGGCGTTTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGATGTTTATTGCCCTAACTGCTGCCGAAATGGATTTT
CTCAGCAATGTCCAGATTGTCAAGCATGGGAAAAACAACATCATCACGTCTCTCATGAAGCGCTTTTTACCTACAATTCT
TCAATGAAAGATTATTTCTCAAAATATAAATTTCAAGGAGATATCCTTTTAAGTCACGTTTTTTCAAAAGAACTCAAACA
AGCATTAAAAAAATATAAAAATTACACCTTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCGCTTTTACAAGCAGCTAAAATCTCCTACGAAGACTTACTAATCAAGAGAGAAATCAGTAAACAGTCCGAT
AAAACACGAAAAGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTAAAAAATGTTTCAAAGGTGCCAGAAAATGTCTTGAT
TATTGATGATATTTACACAACTGGCGCCACTTTAAAAGGAATATATCAACTTTTCTATGAAAATGGCGCAAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

51.818

100

0.518
  comFC/cflB Streptococcus pneumoniae TIGR4

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae Rx1

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae D39

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae R6

51.364

100

0.514
  comFC/cflB Streptococcus mitis SK321

50.909

100

0.509