Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   FOC63_RS06525 Genome accession   NZ_CP054015
Coordinates   1281680..1282981 (+) Length   433 a.a.
NCBI ID   WP_009853575.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1276680..1287981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS06500 (FOC63_06500) - 1277331..1277975 (+) 645 WP_009853571.1 response regulator transcription factor -
  FOC63_RS06505 (FOC63_06505) - 1278094..1279494 (+) 1401 WP_009853572.1 Cof-type HAD-IIB family hydrolase -
  FOC63_RS06510 (FOC63_06510) - 1279494..1279850 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  FOC63_RS06515 (FOC63_06515) cysK 1279964..1280893 (-) 930 WP_009853573.1 cysteine synthase A -
  FOC63_RS06520 (FOC63_06520) - 1280997..1281623 (-) 627 WP_009853574.1 YigZ family protein -
  FOC63_RS06525 (FOC63_06525) comFA/cflA 1281680..1282981 (+) 1302 WP_009853575.1 DEAD/DEAH box helicase Machinery gene
  FOC63_RS06530 (FOC63_06530) comFC/cflB 1282978..1283640 (+) 663 WP_009853576.1 ComF family protein Machinery gene
  FOC63_RS06535 (FOC63_06535) hpf 1283716..1284264 (+) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49072.28 Da        Isoelectric Point: 9.9437

>NTDB_id=450161 FOC63_RS06525 WP_009853575.1 1281680..1282981(+) (comFA/cflA) [Streptococcus gallolyticus strain FDAARGOS_755]
MDKLDNYYGRLFTQAQLSDALKKQAKQLPAMTKLNHHYVCNRCGSQVSLQNKLQTNVFYCRNCLVFGRNTSNGHLYYFPQ
KRFSKKASLIWKGKLTPYQDDVSKGMLEGIDAKKDLLIHAVTGAGKTEMIYQSVSKIIDDGGCVCLASPRIDVCLELYKR
LSRDFSCPITLLHGDSEPYKRAPLIIATTHQLLKFYQAFDLLIIDEVDAFPFVDNAVLYHAVDKAIKPNGTKIFLTATST
DELDKKVKTGTLTKLHLARRFHANPLVVPQKIWLSGVLSNMQKKKIPQKLINLLKKQRQTCYPLLIFFPNIEQGEAFTQI
LQTYFPEEQIAFVSSKTENRLEIVEKFRKQELSILVTTTILERGVTFPCVDVFVVLANHRLYTKSALVQISGRVGRAAER
PTGELLFLHDGSTKEMRKAIAEIKAMNKKGGFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=450161 FOC63_RS06525 WP_009853575.1 1281680..1282981(+) (comFA/cflA) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGGATAAACTGGATAATTATTATGGAAGACTATTTACACAAGCTCAACTTTCGGATGCCTTAAAAAAGCAGGCTAAACA
GTTGCCAGCAATGACAAAATTAAATCATCATTATGTTTGCAATCGTTGTGGTAGTCAAGTGTCTTTACAAAATAAACTTC
AAACAAACGTTTTTTATTGTCGAAATTGCCTTGTTTTTGGAAGAAATACGAGTAATGGACATCTCTATTATTTTCCACAA
AAACGTTTTTCTAAAAAAGCTTCTCTTATTTGGAAAGGAAAATTGACTCCTTACCAAGATGACGTTTCAAAAGGGATGTT
AGAAGGCATTGATGCTAAGAAAGACCTACTTATTCATGCTGTTACAGGTGCTGGAAAAACAGAAATGATTTACCAATCTG
TATCCAAAATAATTGATGACGGTGGTTGTGTTTGCCTGGCAAGTCCGCGAATTGATGTTTGTCTGGAGCTTTATAAACGC
TTGTCGCGTGATTTTTCGTGTCCGATTACATTGCTTCATGGAGATTCTGAGCCCTACAAACGTGCCCCTTTAATCATTGC
CACAACACATCAACTTTTAAAATTTTACCAAGCTTTTGATTTGTTAATTATTGATGAAGTTGATGCCTTTCCATTTGTGG
ATAATGCTGTGCTTTACCATGCTGTTGATAAAGCTATCAAACCTAATGGAACCAAGATTTTTTTAACAGCGACATCAACA
GATGAATTAGATAAAAAAGTAAAAACAGGAACTCTGACCAAATTGCACCTTGCTCGACGCTTTCATGCCAATCCATTAGT
TGTGCCACAAAAAATCTGGTTGTCTGGCGTTTTATCCAATATGCAAAAGAAGAAAATTCCCCAGAAATTAATAAATCTTC
TAAAAAAACAACGTCAAACCTGCTATCCTTTGCTAATTTTCTTCCCAAATATCGAACAAGGAGAAGCCTTTACTCAAATT
TTACAAACTTACTTTCCAGAAGAACAAATCGCTTTTGTGTCTAGTAAAACAGAAAATCGCTTAGAAATTGTAGAAAAATT
TAGGAAACAAGAACTTTCTATTTTGGTAACAACAACCATTTTAGAACGTGGCGTCACTTTCCCATGCGTAGATGTTTTTG
TAGTGCTTGCCAATCATAGATTATACACCAAAAGCGCGCTAGTTCAGATTTCAGGGCGAGTTGGGAGAGCAGCAGAGCGT
CCAACAGGAGAACTGTTATTCTTGCATGACGGTAGCACTAAAGAAATGAGAAAAGCTATTGCTGAAATTAAAGCGATGAA
TAAAAAAGGAGGATTTGCATGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(96-244)

Helicase conserved C-terminal domain (Helicase_C)

(287-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae TIGR4

60.187

98.614

0.594
  comFA/cflA Streptococcus pneumoniae Rx1

60.187

98.614

0.594
  comFA/cflA Streptococcus pneumoniae D39

60.187

98.614

0.594
  comFA/cflA Streptococcus pneumoniae R6

60.187

98.614

0.594
  comFA/cflA Streptococcus mitis NCTC 12261

59.953

98.614

0.591
  comFA/cflA Streptococcus mitis SK321

59.251

98.614

0.584
  comFA Lactococcus lactis subsp. cremoris KW2

50.98

94.226

0.48
  comFA Latilactobacillus sakei subsp. sakei 23K

38.391

100

0.386