Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6H03_RS09170 Genome accession   NZ_CP065607
Coordinates   1759617..1760084 (+) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli strain FDAARGOS_946     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1754617..1765084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H03_RS09125 (I6H03_09130) rplP 1754727..1755137 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  I6H03_RS09130 (I6H03_09135) rpsC 1755150..1755851 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  I6H03_RS09135 (I6H03_09140) rplV 1755869..1756201 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  I6H03_RS09140 (I6H03_09145) rpsS 1756216..1756494 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  I6H03_RS09145 (I6H03_09150) rplB 1756511..1757332 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  I6H03_RS09150 (I6H03_09155) rplW 1757350..1757652 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  I6H03_RS09155 (I6H03_09160) rplD 1757649..1758254 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  I6H03_RS09160 (I6H03_09165) rplC 1758265..1758894 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  I6H03_RS09165 (I6H03_09170) rpsJ 1758927..1759238 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  I6H03_RS09170 (I6H03_09175) pilD 1759617..1760084 (+) 468 WP_000381746.1 A24 family peptidase Machinery gene
  I6H03_RS09175 (I6H03_09180) bfr 1760081..1760557 (-) 477 WP_000675516.1 bacterioferritin -
  I6H03_RS09180 (I6H03_09185) bfd 1760630..1760824 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  I6H03_RS09185 (I6H03_09190) tuf 1761007..1762191 (-) 1185 WP_000031783.1 elongation factor Tu -
  I6H03_RS09190 (I6H03_09195) fusA 1762262..1764376 (-) 2115 WP_000124700.1 elongation factor G -
  I6H03_RS09195 (I6H03_09200) rpsG 1764473..1764943 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=450152 I6H03_RS09170 WP_000381746.1 1759617..1760084(+) (pilD) [Escherichia coli strain FDAARGOS_946]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=450152 I6H03_RS09170 WP_000381746.1 1759617..1760084(+) (pilD) [Escherichia coli strain FDAARGOS_946]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387