Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   FOC63_RS05350 Genome accession   NZ_CP054015
Coordinates   1059357..1059839 (+) Length   160 a.a.
NCBI ID   WP_043913839.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054357..1064839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS05350 (FOC63_05350) comX/sigX 1059357..1059839 (+) 483 WP_043913839.1 sigma-70 family RNA polymerase sigma factor Regulator
  FOC63_RS05355 (FOC63_05355) - 1059979..1060245 (+) 267 WP_009853366.1 ACT domain-containing protein -
  FOC63_RS05360 (FOC63_05360) - 1060257..1061594 (+) 1338 WP_009853367.1 PFL family protein -
  FOC63_RS05365 (FOC63_05365) - 1061818..1062522 (+) 705 WP_009853368.1 histidine phosphatase family protein -
  FOC63_RS05370 (FOC63_05370) - 1062506..1063279 (+) 774 WP_009853369.1 M15 family metallopeptidase -
  FOC63_RS05375 (FOC63_05375) - 1063276..1063857 (+) 582 WP_009853370.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 19246.13 Da        Isoelectric Point: 7.9986

>NTDB_id=450151 FOC63_RS05350 WP_043913839.1 1059357..1059839(+) (comX/sigX) [Streptococcus gallolyticus strain FDAARGOS_755]
METFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTQIEPFFNEFREK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=450151 FOC63_RS05350 WP_043913839.1 1059357..1059839(+) (comX/sigX) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATTATG
GGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGGACG
ACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTGAAA
CGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTGGGAGCGGGAGCAAAAGAAAAACTAGCGAAGG
TGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAGGGAAAAA
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.