Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC69_RS08310 Genome accession   NZ_CP054003
Coordinates   1685600..1686058 (-) Length   152 a.a.
NCBI ID   WP_005776338.1    Uniprot ID   A0A4Q0U428
Organism   Bacteroides fragilis strain FDAARGOS_763     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1680600..1691058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC69_RS08285 (FOC69_08285) - 1681593..1681895 (+) 303 WP_005776345.1 GNAT family N-acetyltransferase -
  FOC69_RS08290 (FOC69_08290) - 1681909..1682124 (+) 216 WP_005776344.1 (4Fe-4S)-binding protein -
  FOC69_RS08295 (FOC69_08295) - 1682207..1683349 (-) 1143 WP_005776342.1 hypothetical protein -
  FOC69_RS08300 (FOC69_08300) - 1683463..1684110 (-) 648 WP_032541354.1 4'-phosphopantetheinyl transferase family protein -
  FOC69_RS08305 (FOC69_08305) - 1684118..1685464 (-) 1347 WP_032541353.1 gliding motility-associated protein GldE -
  FOC69_RS08310 (FOC69_08310) ssb 1685600..1686058 (-) 459 WP_005776338.1 single-stranded DNA-binding protein Machinery gene
  FOC69_RS08315 (FOC69_08315) - 1686146..1687714 (-) 1569 WP_032540016.1 sulfatase family protein -
  FOC69_RS08320 (FOC69_08320) mutY 1687758..1688804 (-) 1047 WP_032531837.1 A/G-specific adenine glycosylase -
  FOC69_RS08325 (FOC69_08325) - 1689009..1689284 (+) 276 WP_005776335.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16725.68 Da        Isoelectric Point: 5.7512

>NTDB_id=450052 FOC69_RS08310 WP_005776338.1 1685600..1686058(-) (ssb) [Bacteroides fragilis strain FDAARGOS_763]
MSVNKVILIGNVGKDPEVRYLDTGIAVASFPLATTDRAYTLSNGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQSGAKRYVTEIFVDNMEMLTPKGAGAGSYAPSQQQAAAPVRPQPQQPQQSASSQDNPADDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=450052 FOC69_RS08310 WP_005776338.1 1685600..1686058(-) (ssb) [Bacteroides fragilis strain FDAARGOS_763]
ATGTCAGTAAATAAAGTGATATTGATAGGAAATGTCGGTAAAGACCCTGAAGTGAGATATTTGGATACGGGTATTGCTGT
GGCCAGTTTTCCTTTGGCTACAACCGACCGTGCATATACTTTGTCTAATGGTACACAAGTGCCTGAGCGGACTGAATGGC
ACAATCTTGTACTTTGGCGAGGACTGGCAGAAACTGCCGAGAAATATGTACATAAAGGTGATAAACTCTATGTGGAAGGT
AAGATAAGAACTCGTTCTTATGATGACCAGAGTGGGGCAAAACGCTATGTTACCGAGATATTTGTAGATAATATGGAAAT
GCTGACTCCGAAAGGTGCCGGTGCCGGATCGTATGCTCCGTCACAGCAGCAGGCTGCTGCTCCCGTACGGCCTCAACCGC
AACAACCGCAGCAATCGGCATCTTCACAAGATAATCCGGCAGACGATCTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q0U428

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

41.573

100

0.487
  ssb Neisseria meningitidis MC58

39.205

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.205

100

0.454
  ssb Glaesserella parasuis strain SC1401

37.079

100

0.434
  ssb Latilactobacillus sakei subsp. sakei 23K

32.37

100

0.368