Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | I5367_RS12610 | Genome accession | NZ_CP065539 |
| Coordinates | 2602496..2603500 (-) | Length | 334 a.a. |
| NCBI ID | WP_007408185.1 | Uniprot ID | A7Z768 |
| Organism | Bacillus amyloliquefaciens strain DGL1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2597496..2608500
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5367_RS12580 (I5367_12580) | - | 2598524..2599180 (-) | 657 | WP_003152699.1 | DUF421 domain-containing protein | - |
| I5367_RS12585 (I5367_12585) | - | 2599347..2599733 (+) | 387 | WP_003152697.1 | TIGR04086 family membrane protein | - |
| I5367_RS12590 (I5367_12590) | yajC | 2599785..2600063 (-) | 279 | WP_041482206.1 | preprotein translocase subunit YajC | - |
| I5367_RS12595 (I5367_12595) | tgt | 2600076..2601221 (-) | 1146 | WP_007408186.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| I5367_RS12600 (I5367_12600) | queA | 2601249..2602277 (-) | 1029 | WP_012118092.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| I5367_RS12605 (I5367_12605) | - | 2602303..2602503 (-) | 201 | WP_023357061.1 | DUF2905 domain-containing protein | - |
| I5367_RS12610 (I5367_12610) | ruvB | 2602496..2603500 (-) | 1005 | WP_007408185.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| I5367_RS12615 (I5367_12615) | ruvA | 2603511..2604116 (-) | 606 | WP_003152683.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| I5367_RS12620 (I5367_12620) | - | 2604251..2604760 (-) | 510 | WP_012118093.1 | intercompartmental signaling factor BofC | - |
| I5367_RS19595 | - | 2604892..2605011 (-) | 120 | WP_023357063.1 | hypothetical protein | - |
| I5367_RS12630 (I5367_12630) | - | 2605145..2605738 (-) | 594 | WP_014721606.1 | YhcN/YlaJ family sporulation lipoprotein | - |
| I5367_RS12635 (I5367_12635) | safA | 2605886..2607106 (-) | 1221 | WP_012118096.1 | SafA/ExsA family spore coat assembly protein | - |
| I5367_RS12640 (I5367_12640) | nadA | 2607233..2608336 (-) | 1104 | WP_012118097.1 | quinolinate synthase NadA | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37224.57 Da Isoelectric Point: 4.9033
>NTDB_id=450025 I5367_RS12610 WP_007408185.1 2602496..2603500(-) (ruvB) [Bacillus amyloliquefaciens strain DGL1]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPARD
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPARD
Nucleotide
Download Length: 1005 bp
>NTDB_id=450025 I5367_RS12610 WP_007408185.1 2602496..2603500(-) (ruvB) [Bacillus amyloliquefaciens strain DGL1]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACATCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCAACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAAAAGCACCGGCTCTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTTCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACATCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCAACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAAAAGCACCGGCTCTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTTCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
92.216 |
100 |
0.922 |
| ruvB | Streptococcus pneumoniae TIGR4 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae R6 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae D39 |
60.736 |
97.605 |
0.593 |
| ruvB | Synechocystis sp. PCC 6803 |
58.359 |
98.503 |
0.575 |
| ruvB | Helicobacter pylori 26695 |
52.744 |
98.204 |
0.518 |