Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   FOC71_RS06840 Genome accession   NZ_CP053999
Coordinates   1355407..1356249 (-) Length   280 a.a.
NCBI ID   WP_003072666.1    Uniprot ID   A0A930REM3
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1350407..1361249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS06825 (FOC71_06825) trmFO 1351250..1352584 (-) 1335 WP_003072673.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  FOC71_RS06830 (FOC71_06830) - 1352678..1353172 (-) 495 WP_003072671.1 hypothetical protein -
  FOC71_RS06835 (FOC71_06835) topA 1353228..1355321 (-) 2094 WP_172851988.1 type I DNA topoisomerase -
  FOC71_RS06840 (FOC71_06840) dprA/cilB/dalA 1355407..1356249 (-) 843 WP_003072666.1 DNA-processing protein DprA Machinery gene
  FOC71_RS06845 (FOC71_06845) - 1356642..1356983 (-) 342 WP_003072664.1 Imm59 family immunity protein -
  FOC71_RS06850 (FOC71_06850) - 1356987..1357322 (-) 336 WP_003072663.1 Imm59 family immunity protein -
  FOC71_RS06855 (FOC71_06855) - 1357315..1357650 (-) 336 WP_003072661.1 Imm59 family immunity protein -
  FOC71_RS06860 (FOC71_06860) - 1357647..1358015 (-) 369 Protein_1329 TNT domain-containing protein -
  FOC71_RS06865 (FOC71_06865) - 1358056..1358382 (-) 327 WP_230451220.1 Imm59 family immunity protein -
  FOC71_RS06870 (FOC71_06870) - 1358375..1358704 (-) 330 WP_003072653.1 Imm59 family immunity protein -
  FOC71_RS06875 (FOC71_06875) - 1358708..1359046 (-) 339 WP_003072652.1 Imm59 family immunity protein -
  FOC71_RS09860 - 1359043..1359324 (-) 282 WP_003072650.1 glycohydrolase toxin TNT-related protein -
  FOC71_RS06880 (FOC71_06880) - 1359349..1361193 (-) 1845 Protein_1334 T7SS effector LXG polymorphic toxin -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31187.71 Da        Isoelectric Point: 5.4063

>NTDB_id=450025 FOC71_RS06840 WP_003072666.1 1355407..1356249(-) (dprA/cilB/dalA) [Streptococcus intermedius strain FDAARGOS_769]
MNNFDIYKLKEAGLTNQQVINVLEYAEIHEKDLSAKDMAVVSECRNPALFIEKYLQLDDDLLRQEFEKFPSFSILDDVYP
WDLSEIYNPPVLLFYKGNLDLLKLPKVAVVGSRNSSRIGSQSVQKIIKELNNELVIVSGLARGIDTSAHMAALQNGGRTI
AVIGTGLDVFYPRANKKLQSYLGEHHLVLSEYGPEAEPLKFHFPERNRIIAGLCRGVIVAEAKMRSGSLITCERAMEEGR
DVFAIPGSILDGRSDGCHHLIQEGAKCITSGSDVLSEFQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=450025 FOC71_RS06840 WP_003072666.1 1355407..1356249(-) (dprA/cilB/dalA) [Streptococcus intermedius strain FDAARGOS_769]
ATGAATAATTTTGATATTTATAAATTAAAAGAAGCCGGCTTGACAAACCAACAAGTTATCAATGTATTAGAATATGCTGA
AATACATGAAAAAGATTTGTCTGCCAAAGACATGGCAGTTGTTTCCGAATGCCGTAATCCTGCTCTTTTTATTGAAAAAT
ATTTGCAGTTAGATGATGATTTATTACGTCAAGAATTTGAGAAGTTCCCATCCTTTTCTATCTTGGACGATGTATATCCT
TGGGATTTGAGTGAAATTTATAATCCACCCGTTCTTCTTTTTTATAAAGGTAATTTGGATTTGCTAAAATTACCTAAAGT
GGCTGTTGTAGGAAGTCGGAATAGTAGCCGAATAGGCAGTCAATCTGTTCAAAAGATTATTAAAGAGCTAAACAATGAAT
TGGTTATTGTGAGTGGTTTAGCACGCGGAATTGATACCTCGGCTCACATGGCAGCGTTGCAAAATGGTGGTCGAACAATT
GCAGTTATCGGAACGGGCCTAGATGTGTTTTATCCAAGGGCGAATAAGAAACTCCAATCGTATTTGGGAGAACATCATCT
AGTGCTTAGTGAGTATGGTCCTGAAGCAGAGCCATTAAAATTTCATTTTCCAGAGCGTAATCGGATTATAGCAGGATTGT
GTAGAGGGGTTATTGTTGCTGAAGCTAAAATGCGCTCAGGCAGCCTTATTACTTGTGAGCGAGCAATGGAAGAAGGGCGA
GATGTATTTGCTATTCCAGGGTCAATTTTAGATGGAAGAAGTGATGGCTGTCATCATTTGATTCAGGAGGGAGCAAAATG
CATTACATCAGGGTCTGACGTACTTTCTGAATTCCAGTTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

76.786

100

0.768
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

76.429

100

0.764
  dprA/cilB/dalA Streptococcus pneumoniae D39

76.429

100

0.764
  dprA/cilB/dalA Streptococcus pneumoniae R6

76.429

100

0.764
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

76.429

100

0.764
  dprA/cilB/dalA Streptococcus mitis SK321

76.071

100

0.761
  dprA Streptococcus mutans UA159

65.357

100

0.654
  dprA Lactococcus lactis subsp. cremoris KW2

57.143

100

0.571
  dprA Legionella pneumophila strain ERS1305867

43.154

86.071

0.371
  dprA Bacillus subtilis subsp. subtilis str. 168

48.095

75

0.361