Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   I5367_RS08515 Genome accession   NZ_CP065539
Coordinates   1688004..1688435 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1683004..1693435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS08495 (I5367_08495) spoVS 1683574..1683834 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  I5367_RS08500 (I5367_08500) tdh 1684092..1685138 (+) 1047 WP_041482192.1 L-threonine 3-dehydrogenase -
  I5367_RS08505 (I5367_08505) - 1685151..1686329 (+) 1179 WP_098081411.1 glycine C-acetyltransferase -
  I5367_RS08510 (I5367_08510) miaB 1686472..1688001 (+) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  I5367_RS08515 (I5367_08515) ymcA 1688004..1688435 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  I5367_RS08520 (I5367_08520) cotE 1688688..1689233 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  I5367_RS08525 (I5367_08525) hexA 1689352..1691937 (+) 2586 WP_041482253.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=449993 I5367_RS08515 WP_003154113.1 1688004..1688435(+) (ymcA) [Bacillus amyloliquefaciens strain DGL1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=449993 I5367_RS08515 WP_003154113.1 1688004..1688435(+) (ymcA) [Bacillus amyloliquefaciens strain DGL1]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916