Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOC80_RS24670 Genome accession   NZ_CP053987
Coordinates   5305272..5306798 (-) Length   508 a.a.
NCBI ID   WP_062680695.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain FDAARGOS_786     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5300272..5311798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC80_RS24645 (FOC80_24645) - 5300435..5300776 (-) 342 WP_087881462.1 integration host factor subunit alpha -
  FOC80_RS24650 (FOC80_24650) pheT 5300780..5303197 (-) 2418 WP_062680690.1 phenylalanine--tRNA ligase subunit beta -
  FOC80_RS24655 (FOC80_24655) pheS 5303211..5304233 (-) 1023 WP_062680692.1 phenylalanine--tRNA ligase subunit alpha -
  FOC80_RS24660 (FOC80_24660) rplT 5304311..5304670 (-) 360 WP_006218741.1 50S ribosomal protein L20 -
  FOC80_RS24665 (FOC80_24665) rpmI 5304686..5304883 (-) 198 WP_006218740.1 50S ribosomal protein L35 -
  FOC80_RS24670 (FOC80_24670) comM 5305272..5306798 (-) 1527 WP_062680695.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOC80_RS24675 (FOC80_24675) - 5306970..5307221 (-) 252 WP_043545227.1 accessory factor UbiK family protein -
  FOC80_RS24680 (FOC80_24680) - 5307390..5308325 (-) 936 WP_062680697.1 alpha/beta fold hydrolase -
  FOC80_RS24685 (FOC80_24685) - 5308420..5309001 (+) 582 WP_062680698.1 CGNR zinc finger domain-containing protein -
  FOC80_RS24690 (FOC80_24690) - 5309012..5309974 (-) 963 WP_062680700.1 zinc-dependent alcohol dehydrogenase family protein -
  FOC80_RS24695 (FOC80_24695) - 5310038..5310340 (-) 303 WP_062680702.1 helix-turn-helix transcriptional regulator -
  FOC80_RS24700 (FOC80_24700) - 5311015..5311353 (+) 339 WP_043545226.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 52933.05 Da        Isoelectric Point: 8.6131

>NTDB_id=449731 FOC80_RS24670 WP_062680695.1 5305272..5306798(-) (comM) [Achromobacter denitrificans strain FDAARGOS_786]
MTLAVLASRALCGLDTHAVRVETHLGPGLPGFNVVGLPDTEVRESRERVRAAILNSGFEFPPGRITVNLSPADLPKESGR
FDLPIALGVLLASGQLAAQAEGAPDARAPAPALADLVLAGELSLTGALVPVAAPLVIALGVAREAPGATLILPAGSAEQA
AWVPDLRVLSARSLADVAAHAAGACRLPDAIPRPWPAAPPAACLSDVRGQPGARRALEVAAAGAHSLLMIGPPGAGKSML
AARLPGLLPPLARREALEAAAVAALAGLPDAPMGQPPFRAPHHSASVAALVGGGSRPRPGEISLAHRGVLFLDELPEFNR
RTLEALREPLEAGRVIIARALHSARFPARFQLVAAMNPCPCGWRGHPARACACSPDQAARYVGRVSGPLLDRIDLHVALP
PSDPDWMSGPPGEPSEPVRERVARCRERQLARQGKPNAALEGAELDEHCRMDGEARALLSQAMRRLAGSARALHRALRVA
RTIADLDGEERLAASHVAQAVQYRRPGV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=449731 FOC80_RS24670 WP_062680695.1 5305272..5306798(-) (comM) [Achromobacter denitrificans strain FDAARGOS_786]
TTGACGCTAGCCGTTCTAGCCAGCCGTGCCCTTTGCGGCCTGGACACCCACGCGGTGCGCGTGGAGACGCATCTGGGGCC
CGGGCTGCCCGGCTTCAACGTGGTGGGCTTGCCGGACACCGAGGTGCGCGAGAGCCGCGAGCGAGTGCGTGCCGCCATCC
TCAATAGCGGCTTCGAATTTCCGCCGGGCCGCATCACCGTCAATCTCTCGCCGGCCGACCTGCCCAAGGAGTCCGGCCGC
TTCGACCTGCCCATCGCCCTGGGCGTGTTGCTGGCGTCGGGGCAATTGGCCGCCCAGGCGGAGGGCGCCCCGGATGCGCG
CGCGCCGGCTCCGGCGCTGGCCGACCTGGTGCTGGCCGGCGAGCTGTCGTTGACGGGGGCGCTGGTGCCGGTGGCCGCGC
CGCTGGTCATCGCGCTGGGCGTGGCGCGCGAGGCGCCTGGCGCCACGCTCATCCTGCCGGCCGGCAGCGCCGAGCAGGCG
GCCTGGGTGCCGGACCTGCGGGTGTTGTCCGCGCGCAGTCTGGCCGACGTGGCCGCGCACGCGGCCGGAGCCTGCCGGCT
GCCCGATGCCATTCCCAGGCCCTGGCCGGCGGCGCCGCCGGCGGCGTGCCTGTCGGACGTGCGCGGCCAGCCGGGGGCGC
GGCGGGCGCTGGAGGTCGCGGCGGCGGGAGCGCACAGCCTGCTGATGATCGGTCCGCCGGGCGCGGGCAAGAGCATGCTG
GCCGCGCGCCTGCCGGGCTTGCTGCCGCCCCTGGCGCGGCGGGAGGCGCTGGAAGCCGCTGCGGTGGCGGCCCTGGCGGG
CCTGCCCGACGCGCCGATGGGGCAGCCGCCGTTCCGGGCGCCGCACCATTCCGCGTCCGTCGCGGCGCTGGTGGGCGGGG
GCAGCCGGCCGCGCCCGGGCGAAATCAGTCTGGCGCATCGAGGGGTGCTGTTCCTGGACGAGCTGCCGGAATTCAACCGC
CGAACGCTCGAAGCCCTGCGCGAACCGCTGGAAGCGGGCAGGGTGATCATCGCCCGGGCGCTGCATTCGGCGCGGTTCCC
CGCCCGGTTCCAGCTGGTCGCGGCCATGAACCCATGCCCTTGCGGCTGGCGCGGCCATCCGGCCCGGGCCTGCGCCTGCT
CTCCCGACCAGGCGGCGCGCTATGTGGGCAGGGTGTCCGGCCCCTTGCTGGATCGCATCGATCTGCACGTGGCCCTGCCG
CCCTCCGACCCGGATTGGATGAGCGGCCCGCCGGGCGAGCCCTCGGAGCCCGTGCGCGAGCGCGTGGCGCGTTGCCGCGA
GCGCCAACTGGCCCGCCAGGGCAAGCCGAACGCCGCCCTGGAGGGCGCCGAACTGGACGAGCATTGCCGCATGGATGGCG
AGGCCCGGGCCCTGCTGTCGCAGGCCATGCGCCGGCTGGCCGGGTCGGCCCGGGCCCTGCACCGGGCGCTGCGGGTTGCC
CGGACTATTGCCGACCTGGACGGCGAGGAGCGGCTGGCGGCGTCCCACGTCGCCCAGGCCGTGCAATACCGGCGGCCGGG
AGTATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-154)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-402)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.633

100

0.49
  comM Vibrio campbellii strain DS40M4

48.039

100

0.482
  comM Haemophilus influenzae Rd KW20

47.276

100

0.478
  comM Glaesserella parasuis strain SC1401

45.155

100

0.459
  comM Legionella pneumophila str. Paris

44.227

100

0.445
  comM Legionella pneumophila strain ERS1305867

44.227

100

0.445
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.166

100

0.429