Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   YPD4_RS20235 Genome accession   NC_017154
Coordinates   4362525..4364048 (+) Length   507 a.a.
NCBI ID   WP_002212018.1    Uniprot ID   A0A0E1NR73
Organism   Yersinia pestis D106004     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4357525..4369048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YPD4_RS20220 (YPD4_3434) - 4359053..4359979 (-) 927 WP_002212015.1 branched-chain amino acid transaminase -
  YPD4_RS20225 ilvM 4360002..4360259 (-) 258 WP_002212016.1 acetolactate synthase 2 small subunit -
  YPD4_RS20230 (YPD4_3435) ilvG 4360256..4361902 (-) 1647 WP_002212017.1 acetolactate synthase 2 catalytic subunit -
  YPD4_RS23660 ilvL 4362043..4362141 (-) 99 WP_002231873.1 ilv operon leader peptide -
  YPD4_RS20235 (YPD4_3436) comM 4362525..4364048 (+) 1524 WP_002212018.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  YPD4_RS20240 (YPD4_3437) - 4364305..4364643 (-) 339 WP_002212019.1 DUF413 domain-containing protein -
  YPD4_RS20245 (YPD4_3438) hdfR 4364762..4365643 (+) 882 WP_002212020.1 HTH-type transcriptional regulator HdfR -
  YPD4_RS20250 (YPD4_3439) yjfF 4365630..4366622 (-) 993 WP_002212021.1 galactofuranose ABC transporter, permease protein YjfF -
  YPD4_RS20255 (YPD4_3440) ytfT 4366622..4367641 (-) 1020 WP_002212022.1 galactofuranose ABC transporter, ATP-binding protein YtfT -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54491.00 Da        Isoelectric Point: 7.6013

>NTDB_id=44923 YPD4_RS20235 WP_002212018.1 4362525..4364048(+) (comM) [Yersinia pestis D106004]
MSLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNFPAKRITVSLAPADLPKEGGR
YDLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVSGAIPAALTCSEANRQLILPTANGLEIGLIPQGNSWVADHL
LAVCGFLQGENPLAQGQPFEPAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTD
QEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLE
SGEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQ
GESSATVKQRVLQARQRQMDRAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKT
IQKSHLSEALSYRCMDRLLLQLHKSLM

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=44923 YPD4_RS20235 WP_002212018.1 4362525..4364048(+) (comM) [Yersinia pestis D106004]
ATGTCACTGGCAACCATTCATACTCGCGCAACATTGGGCATTCAAGCCCCTCCTGTCGCGGTAGAAGTTCATATCAGCAA
TGGATTACCCGGATTGATATTGGTCGGCTTACCTGAAACAACGGTCAAAGAAGCACGGGATCGGGTTCGTAGCGCATTAA
TTAACAGCGGTTTTAATTTTCCCGCCAAGCGGATCACCGTCAGCCTGGCACCGGCAGATTTACCCAAAGAAGGCGGGCGC
TATGATCTCCCCATTGCTTTAGCCATCTTGGCCGCCTCAGAGCAGATCCCTGCGGATAAGTTAGCGCACTATGAGTTCTT
GGGTGAATTAGCCCTATCCGGCGCGTTAAGGCGCGTTAGCGGCGCAATTCCAGCAGCACTCACCTGTAGCGAAGCTAACC
GTCAGTTAATCCTTCCCACCGCTAATGGTCTTGAAATTGGTCTAATCCCACAAGGCAACTCCTGGGTCGCAGACCATTTA
TTAGCGGTATGCGGTTTCTTACAAGGTGAAAACCCCCTCGCACAGGGCCAGCCCTTCGAACCGGCCCCTTCACCGGATAA
CCACCTTGATTTACACGACATCATTGGTCAATCGCAGGCTAAACGTGCGTTAGAAATCGCGGCGGCAGGTGGTCATAACC
TGCTGTTACTCGGGCCACCAGGTACCGGTAAAACGATGCTGGCAACCCGCCTAACCGGGTTATTGCCTCCGCTGACCGAT
CAGGAGGCGTTAGAAGCAGCGGCGATCACCGGGTTGCTGCATAGCAACGCACTGCCAACACAATGGCGTTGCCGGGCCTT
TCGTGCCCCACACCATAGCGCATCGATGGCAGCGCTGATTGGCGGCGGCTCCATCCCCCGCCCCGGTGAGATATCACTGG
CCCATAACGGTGTGTTATTTCTCGATGAACTGCCTGAATTTGAACGCCGGGTACTGGATTCACTGCGCGAACCGTTGGAA
TCTGGCGAAATTATTATCTCCCGCGCGGCAGCCAAAATCTGTTTTCCAGCCAAAGTGCAACTTATCGCGGCGATGAACCC
TAGCCCCAGCGGCCACTACCAAGGCGTTCATAACCGCACACCGCCACAGCAAATTTTGCGCTATCTGGCCAAGTTGTCCG
GGCCATTTCTCGATAGATTCGATTTATCGATAGAAGTGCCATTACTGCCAGCCGGTATGCTGGGTGCGCAGAAAAATCAG
GGGGAGAGTAGCGCTACAGTCAAGCAGCGAGTGTTACAGGCCAGACAAAGGCAAATGGACCGGGCGGGGAAGATCAATAC
GCAGCTCACTAGCCAAGAGGTAGCAGAGTTTTGTTATTTAGCACCTGAGGATGCCGCGTTTCTCGAGCAGGTTTTACTGA
CACTCGGCCTGTCAGTACGTGCCTGGCACCATATTTTGAAAGTGGCGCGAACCATTGCCGATTTAGCGCAAGAAAAGACC
ATCCAAAAAAGTCATCTTTCAGAGGCGCTGAGCTATCGCTGTATGGATCGCCTGCTATTGCAGTTGCACAAAAGCCTGAT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1NR73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.803

0.637
  comM Glaesserella parasuis strain SC1401

62.722

100

0.627
  comM Vibrio cholerae strain A1552

62.55

99.014

0.619
  comM Vibrio campbellii strain DS40M4

62.351

99.014

0.617
  comM Legionella pneumophila str. Paris

51.6

98.619

0.509
  comM Legionella pneumophila strain ERS1305867

51.6

98.619

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.204

100

0.444

Multiple sequence alignment