Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQK31_RS22435 Genome accession   NZ_CP053918
Coordinates   4670128..4670658 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain LY1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4665128..4675658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQK31_RS22400 - 4665468..4665875 (-) 408 WP_141972314.1 VOC family protein -
  HQK31_RS22405 - 4665923..4666591 (-) 669 WP_049201475.1 glutathione S-transferase family protein -
  HQK31_RS22410 - 4666588..4667031 (-) 444 WP_151428188.1 lipocalin-like domain-containing protein -
  HQK31_RS22415 - 4667228..4667488 (+) 261 WP_369436569.1 DUF1471 domain-containing protein -
  HQK31_RS22420 - 4667638..4668387 (+) 750 WP_151428187.1 3-oxoacyl-ACP reductase family protein -
  HQK31_RS22425 - 4668651..4668863 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  HQK31_RS22430 - 4668977..4670041 (+) 1065 WP_225735543.1 cyclase family protein -
  HQK31_RS22435 ssb 4670128..4670658 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HQK31_RS22440 uvrA 4670936..4673764 (+) 2829 WP_164067749.1 excinuclease ABC subunit UvrA -
  HQK31_RS22445 - 4673993..4675045 (+) 1053 WP_164067750.1 NAD(P)-dependent alcohol dehydrogenase -
  HQK31_RS22450 maa 4675079..4675636 (-) 558 WP_164067752.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=448938 HQK31_RS22435 WP_004936793.1 4670128..4670658(-) (ssb) [Serratia marcescens strain LY1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=448938 HQK31_RS22435 WP_004936793.1 4670128..4670658(-) (ssb) [Serratia marcescens strain LY1]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAAAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACGCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364