NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	HQ398_RS18905	Genome accession	NZ_CP053882
Coordinates	4016713..4018227 (-)	Length	504 a.a.
NCBI ID	WP_215806515.1	Uniprot ID	-
Organism	Aeromonas jandaei strain 3036
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4011713..4023227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ398_RS18875 (HQ398_18845)	pncB	4011750..4012928 (-)	1179	WP_041209470.1	nicotinate phosphoribosyltransferase	-
HQ398_RS18880 (HQ398_18850)	-	4012930..4013565 (-)	636	WP_041209471.1	nicotinamidase	-
HQ398_RS18885 (HQ398_18855)	-	4013640..4014290 (+)	651	WP_042031952.1	DNA mismatch repair protein MutT	-
HQ398_RS18890 (HQ398_18860)	-	4014287..4014790 (+)	504	WP_215806511.1	DUF523 domain-containing protein	-
HQ398_RS18895 (HQ398_18865)	-	4014715..4015680 (-)	966	WP_215806513.1	acyltransferase	-
HQ398_RS18900 (HQ398_18870)	-	4015687..4016586 (-)	900	WP_071913708.1	acyltransferase	-
HQ398_RS18905 (HQ398_18875)	comM	4016713..4018227 (-)	1515	WP_215806515.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HQ398_RS18910 (HQ398_18880)	ilvG	4018612..4020258 (+)	1647	WP_215806517.1	acetolactate synthase 2 catalytic subunit	-
HQ398_RS18915 (HQ398_18885)	ilvM	4020255..4020533 (+)	279	WP_005342011.1	acetolactate synthase 2 small subunit	-
HQ398_RS18920 (HQ398_18890)	-	4020546..4021490 (+)	945	WP_215806519.1	branched-chain amino acid transaminase	-

Sequence

Protein

Download Length: 504 a.a. Molecular weight: 54581.49 Da Isoelectric Point: 7.4493

                                >NTDB_id=448396 HQ398_RS18905 WP_215806515.1 4016713..4018227(-) (comM) [Aeromonas jandaei strain 3036]

MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR

FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL

LAVTAWLAGQYELPLPDQQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ

EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET

GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG

ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGQPVI

GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide

Download Length: 1515 bp

                                >NTDB_id=448396 HQ398_RS18905 WP_215806515.1 4016713..4018227(-) (comM) [Aeromonas jandaei strain 3036]

ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA

CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCAGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC

TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT

TTCGATCTGGCCATCGCCATCGGAATTCTCGCAGCTTCAAAACAAATACCTGCAAAATACCTGCTTGATCACGAATTTTT

AGGCGAGTTGGCTCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC

GCACCCTGCTGGTGCCGCGGGAAAACGGCCCCGAAGCCTCCCTGATTCAGGATGCCGAGGTGCGCACCGCTCACCAACTG

CTGGCCGTCACCGCCTGGCTGGCCGGCCAGTACGAGCTGCCACTGCCGGATCAACAAAGCGCGGAGAGCCTGCCCGATGT

ACCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGT

TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAGCAG

GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGTCTCACCCCGCGCGCTGGTCACTGGCACCACAGGCCCTATCG

CACACCCCACCACAGTGCCTCGGCGGTGGCGCTGGTGGGAGGCGGCAGCCACCCAAGACCCGGCGAAATATCGCTGGCCC

ACAACGGAGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG

GGCCACATCACAATCAGTAGAGCCGCCCGTCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG

CCCCTGTGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC

CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTGACCGGCAAGGCGGAGCGGGGG

GAGTCGAGCCAGCAGATCCGTGATCGGGTGCTGGCGGCACGGGAGCGGATGCTGAGCCGCAACGGCAAGCTCAACAACCT

GCTTGATAGCCGTGAGATAGAGGATATTTGCCGACTATCACCGCAAGATGCCGAATTTTTGGAAGGTGCCATCCAGAAGC

TGGGGCTCAGTATCCGGGCCTGGCACCGCATCCTGCGGGTATCTCGTACCATCGCCGATCTGGCCGGGCAACCCGTTATC

GGCAAGGAGCATCTTATCGAGGCGCTCGGCTACCGGGCCATGGACCGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	63.347	99.603	0.631
comM	Haemophilus influenzae Rd KW20	61.66	100	0.619
comM	Vibrio campbellii strain DS40M4	61.753	99.603	0.615
comM	Glaesserella parasuis strain SC1401	60.947	100	0.613
comM	Legionella pneumophila str. Paris	50.992	100	0.51
comM	Legionella pneumophila strain ERS1305867	50.992	100	0.51
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.047	100	0.462

Detailed information NTG0448396