Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   STMM20_RS05325 Genome accession   NZ_CP065485
Coordinates   1039084..1039263 (-) Length   59 a.a.
NCBI ID   WP_347103463.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM20     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1034084..1044263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM20_RS05295 (STMM20_05325) cas1 1034268..1035272 (-) 1005 WP_014621545.1 CRISPR-associated endonuclease Cas1 -
  STMM20_RS05300 (STMM20_05330) - 1035411..1036358 (-) 948 WP_347103462.1 dihydroorotate dehydrogenase -
  STMM20_RS05305 (STMM20_05335) - 1036377..1037150 (-) 774 WP_011681108.1 dihydroorotate dehydrogenase electron transfer subunit -
  STMM20_RS05310 - 1037149..1037364 (+) 216 WP_011681107.1 hypothetical protein -
  STMM20_RS05315 (STMM20_05340) - 1037421..1037969 (-) 549 WP_014608278.1 DJ-1 family glyoxalase III -
  STMM20_RS05320 (STMM20_05350) - 1038236..1038904 (-) 669 WP_014621543.1 TraX family protein -
  STMM20_RS05325 (STMM20_05355) prx 1039084..1039263 (-) 180 WP_347103463.1 hypothetical protein Regulator
  STMM20_RS05330 (STMM20_05360) - 1039760..1039951 (-) 192 WP_011681104.1 hypothetical protein -
  STMM20_RS05335 (STMM20_05365) - 1039955..1040440 (-) 486 WP_014607832.1 NUDIX domain-containing protein -
  STMM20_RS05340 (STMM20_05370) - 1040746..1041702 (-) 957 WP_014727508.1 hypothetical protein -
  STMM20_RS05345 (STMM20_05375) - 1042025..1043683 (+) 1659 WP_011681101.1 NFACT RNA binding domain-containing protein -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6757.74 Da        Isoelectric Point: 5.6479

>NTDB_id=448229 STMM20_RS05325 WP_347103463.1 1039084..1039263(-) (prx) [Streptococcus thermophilus strain MM20]
MDNGFIKGDTVQIVRKNGKIHDYVLDGERVEPHEILSLEKVSDIIKELGETTKKAPYWC

Nucleotide


Download         Length: 180 bp        

>NTDB_id=448229 STMM20_RS05325 WP_347103463.1 1039084..1039263(-) (prx) [Streptococcus thermophilus strain MM20]
ATGGACAACGGTTTTATTAAAGGTGATACTGTCCAGATTGTCCGAAAGAATGGTAAGATCCATGACTACGTTTTAGACGG
TGAACGAGTTGAGCCACACGAAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAAGAACTAGGCGAGACAACTAAAA
AAGCACCTTACTGGTGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

54.167

81.356

0.441
  prx Streptococcus pyogenes MGAS8232

53.061

83.051

0.441
  prx Streptococcus pyogenes MGAS315

51.02

83.051

0.424
  prx Streptococcus pyogenes MGAS315

50

81.356

0.407
  prx Streptococcus pyogenes MGAS315

71.875

54.237

0.39