Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   AEBR_RS15015 Genome accession   NZ_CP053836
Coordinates   3085143..3085376 (-) Length   77 a.a.
NCBI ID   WP_129085826.1    Uniprot ID   -
Organism   Halarcobacter ebronensis strain LMG 27922     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3080143..3090376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEBR_RS14990 (AEBR_2996) tcuA 3080608..3081981 (+) 1374 WP_129085821.1 FAD-dependent tricarballylate dehydrogenase TcuA -
  AEBR_RS14995 (AEBR_2997) tcuB 3081974..3083089 (+) 1116 WP_129085822.1 tricarballylate utilization 4Fe-4S protein TcuB -
  AEBR_RS15000 (AEBR_2998) - 3083171..3083911 (-) 741 WP_129085823.1 YaaA family protein -
  AEBR_RS15005 (AEBR_2999) - 3084001..3084663 (-) 663 WP_172658918.1 small multi-drug export protein -
  AEBR_RS15010 (AEBR_3000) - 3084647..3085060 (-) 414 WP_129085825.1 YchJ family protein -
  AEBR_RS15015 (AEBR_3001) Cj0011c 3085143..3085376 (-) 234 WP_129085826.1 ComEA family DNA-binding protein Machinery gene
  AEBR_RS15020 (AEBR_3002) - 3085514..3085912 (+) 399 WP_129085827.1 hypothetical protein -
  AEBR_RS15025 (AEBR_3003) - 3085909..3086310 (-) 402 WP_129085828.1 DUF695 domain-containing protein -
  AEBR_RS15030 (AEBR_3004) ung 3086320..3086970 (-) 651 WP_129085829.1 uracil-DNA glycosylase -
  AEBR_RS15035 (AEBR_3005) - 3087044..3087634 (+) 591 WP_129085830.1 LemA family protein -
  AEBR_RS15040 (AEBR_3006) - 3087638..3088543 (+) 906 WP_129085831.1 TPM domain-containing protein -
  AEBR_RS15045 (AEBR_3007) - 3088543..3089151 (+) 609 WP_164969427.1 TPM domain-containing protein -
  AEBR_RS15050 (AEBR_3008) - 3089152..3090330 (+) 1179 WP_129085833.1 MFS transporter -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 8623.17 Da        Isoelectric Point: 8.5317

>NTDB_id=448045 AEBR_RS15015 WP_129085826.1 3085143..3085376(-) (Cj0011c) [Halarcobacter ebronensis strain LMG 27922]
MKNVLFILFMLVAFLFGAVDFNSATKEELMDIKGIGEKKAEAIIEYRKTNKINSVEDLEAIKGFGPGLIEKIKNSNK

Nucleotide


Download         Length: 234 bp        

>NTDB_id=448045 AEBR_RS15015 WP_129085826.1 3085143..3085376(-) (Cj0011c) [Halarcobacter ebronensis strain LMG 27922]
ATGAAAAATGTTTTGTTTATTTTGTTTATGTTGGTTGCATTTCTTTTTGGCGCAGTTGATTTTAATAGTGCTACAAAAGA
GGAGTTGATGGATATAAAAGGTATTGGTGAAAAAAAAGCTGAAGCAATAATTGAGTATAGAAAAACCAATAAAATCAATA
GTGTTGAAGATTTAGAAGCTATAAAGGGATTTGGTCCAGGACTTATTGAAAAGATTAAAAATAGCAATAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.757

96.104

0.545
  comE Neisseria gonorrhoeae MS11

44.444

93.506

0.416
  comE Neisseria gonorrhoeae MS11

44.444

93.506

0.416
  comE Neisseria gonorrhoeae MS11

44.444

93.506

0.416
  comE Neisseria gonorrhoeae MS11

44.444

93.506

0.416
  comEA Acinetobacter baylyi ADP1

52.632

74.026

0.39
  comEA Bacillus subtilis subsp. subtilis str. 168

48.276

75.325

0.364