Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HPY10_RS04905 Genome accession   NZ_CP053822
Coordinates   1055904..1056215 (+) Length   103 a.a.
NCBI ID   WP_001166106.1    Uniprot ID   A0AAU8WU30
Organism   Vibrio cholerae strain E7G     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1050904..1061215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY10_RS04890 (HPY10_04895) lon 1050941..1053301 (+) 2361 WP_001047609.1 endopeptidase La -
  HPY10_RS04895 (HPY10_04900) - 1053485..1053757 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  HPY10_RS04900 (HPY10_04905) ppiD 1053910..1055769 (+) 1860 WP_123011061.1 peptidylprolyl isomerase -
  HPY10_RS04905 (HPY10_04910) comEA 1055904..1056215 (+) 312 WP_001166106.1 ComEA family DNA-binding protein Machinery gene
  HPY10_RS04910 (HPY10_04915) cmk 1056398..1057075 (+) 678 WP_000094752.1 (d)CMP kinase -
  HPY10_RS04915 (HPY10_04920) rpsA 1057184..1058854 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  HPY10_RS04920 (HPY10_04925) ihfB 1059143..1059421 (+) 279 WP_000167341.1 integration host factor subunit beta -
  HPY10_RS04925 (HPY10_04930) - 1059560..1059841 (+) 282 WP_000691492.1 LapA family protein -
  HPY10_RS04930 (HPY10_04935) lapB 1059853..1061022 (+) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10957.76 Da        Isoelectric Point: 4.7228

>NTDB_id=447886 HPY10_RS04905 WP_001166106.1 1055904..1056215(+) (comEA) [Vibrio cholerae strain E7G]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTQI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=447886 HPY10_RS04905 WP_001166106.1 1055904..1056215(+) (comEA) [Vibrio cholerae strain E7G]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCAAATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

99.029

100

0.99
  comEA Vibrio cholerae strain A1552

99.029

100

0.99
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437