Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HPY08_RS04720 Genome accession   NZ_CP053808
Coordinates   1007347..1007658 (+) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae strain SP7G     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1002347..1012658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS04705 (HPY08_04710) lon 1002384..1004744 (+) 2361 WP_001047611.1 endopeptidase La -
  HPY08_RS04710 (HPY08_04715) - 1004928..1005200 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  HPY08_RS04715 (HPY08_04720) ppiD 1005353..1007212 (+) 1860 WP_175242527.1 peptidylprolyl isomerase -
  HPY08_RS04720 (HPY08_04725) comEA 1007347..1007658 (+) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  HPY08_RS04725 (HPY08_04730) cmk 1007841..1008518 (+) 678 WP_000094752.1 (d)CMP kinase -
  HPY08_RS04730 (HPY08_04735) rpsA 1008627..1010297 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  HPY08_RS04735 (HPY08_04740) tnpA 1010464..1010901 (+) 438 WP_000503164.1 IS200/IS605-like element IS1004 family transposase -
  HPY08_RS04740 (HPY08_04745) ihfB 1011208..1011486 (+) 279 WP_000167341.1 integration host factor subunit beta -
  HPY08_RS04745 (HPY08_04750) - 1011625..1011906 (+) 282 WP_033932753.1 LapA family protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=447650 HPY08_RS04720 WP_001166105.1 1007347..1007658(+) (comEA) [Vibrio cholerae strain SP7G]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=447650 HPY08_RS04720 WP_001166105.1 1007347..1007658(+) (comEA) [Vibrio cholerae strain SP7G]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCCCCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGCCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437