Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPY16_RS00100 Genome accession   NZ_CP053802
Coordinates   22645..24168 (+) Length   507 a.a.
NCBI ID   WP_175247894.1    Uniprot ID   -
Organism   Vibrio cholerae strain L6G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17645..29168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS00085 (HPY16_00085) ilvE 19225..20163 (-) 939 WP_071178296.1 branched-chain-amino-acid transaminase -
  HPY16_RS00090 (HPY16_00090) ilvM 20175..20459 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  HPY16_RS00095 (HPY16_00095) ilvG 20471..22117 (-) 1647 WP_175247893.1 acetolactate synthase 2 catalytic subunit -
  HPY16_RS00100 (HPY16_00100) comM 22645..24168 (+) 1524 WP_175247894.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPY16_RS00105 (HPY16_00105) - 24258..25142 (+) 885 WP_000881901.1 acyltransferase -
  HPY16_RS00110 (HPY16_00110) - 25220..25822 (-) 603 WP_000732281.1 thiol:disulfide interchange protein DsbA/DsbL -
  HPY16_RS00115 (HPY16_00115) - 25853..26839 (-) 987 WP_000189620.1 serine/threonine protein kinase -
  HPY16_RS00120 (HPY16_00120) ccoG 26887..28311 (-) 1425 WP_000076153.1 cytochrome c oxidase accessory protein CcoG -
  HPY16_RS00125 (HPY16_00125) - 28712..28978 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55031.09 Da        Isoelectric Point: 8.3637

>NTDB_id=447492 HPY16_RS00100 WP_175247894.1 22645..24168(+) (comM) [Vibrio cholerae strain L6G]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGSERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSHARDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=447492 HPY16_RS00100 WP_175247894.1 22645..24168(+) (comM) [Vibrio cholerae strain L6G]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTGGTAGGATTGCCAGAAACCACAGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCAAAGCGCATTACGGTCAATTTAGCCCCAGCCGATTTACCCAAAGAGGGAGGACGT
TTTGATTTGCCGATTGCACTCGGCATTCTGGCGGCCTCGGATCAAATTGCGCGAACTAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGTGAAATTCGTGGCGTGAAGGGCGTGTTGCCTGCCGCACTTGCGGCTAACCAGGTGGAGC
GCTGTTTGGTGGTGCCACACAGTAATGGCGATCAGGCGGCCTTGGTCGGGAGTGAGCGGCATAAATCGGCGCAAAGCTTA
CTCGAAGTGTGCGCGGACTTGTGTGGTCAGCAAACCCTATCTTTGTTTCAAAGTTCGCCCAGTGTCCAACAAGTAAGTCA
TGCGCGCGATCTGCAAGACATCATAGGTCAGCAGCAAGGGAAACGTGCCTTGGAAATCGCTGCAGCTGGCAATCACAACC
TGCTGTTTCTCGGCCCTCCGGGGACGGGGAAAACCATGCTCGCTTCACGGCTGTGCGATTTATTGCCGGAAATGAGTGAT
GAAGAGGCGATGGAGACGGCCTCGATTGCCTCTCTCACTCAGCAAGAAATTAATCAACACAACTGGAAGTTGCGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCGCTCG
CCCATAATGGACTACTGTTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTGGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCTCGCGCGCAGGGGAAAACCCGTTTTCCGGCGCGCTTTCAATTGGTGGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGAGCCAATCCGCAGAGTATTTTGCGCTATTTGAGCCGGCTTTCAG
GCCCTTTGCTGGATCGCTTTGATATGTCGATTGAGATCCCGGCGTTACCCAAAGGTACGCTCGCTAATGGCGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTCGCGCGTGAGCGTATGCTAGCGCGATCCGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGCATC
GCTTGGGTTTATCTATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAGAACGT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.211

100

0.992
  comM Vibrio campbellii strain DS40M4

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

63.953

100

0.651
  comM Legionella pneumophila str. Paris

51.008

97.83

0.499
  comM Legionella pneumophila strain ERS1305867

51.008

97.83

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.307

100

0.434