Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPY15_RS11860 Genome accession   NZ_CP053800
Coordinates   2622281..2622814 (-) Length   177 a.a.
NCBI ID   WP_000168290.1    Uniprot ID   -
Organism   Vibrio cholerae strain SO5Y     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2617281..2627814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS11840 (HPY15_11850) - 2617736..2618053 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  HPY15_RS11845 (HPY15_11855) gspM 2618046..2618696 (-) 651 WP_002046290.1 type II secretion system protein GspM -
  HPY15_RS11850 (HPY15_11860) - 2618693..2620132 (-) 1440 WP_000743255.1 PilN domain-containing protein -
  HPY15_RS11855 (HPY15_11865) csrD 2620145..2622157 (-) 2013 WP_032472224.1 RNase E specificity factor CsrD -
  HPY15_RS11860 (HPY15_11870) ssb 2622281..2622814 (-) 534 WP_000168290.1 single-stranded DNA-binding protein Machinery gene
  HPY15_RS11865 (HPY15_11875) qstR 2623106..2623750 (+) 645 WP_001188316.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY15_RS11870 (HPY15_11880) galU 2623923..2624795 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY15_RS11875 (HPY15_11885) uvrA 2624951..2627773 (+) 2823 WP_071179834.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19674.87 Da        Isoelectric Point: 5.7626

>NTDB_id=447480 HPY15_RS11860 WP_000168290.1 2622281..2622814(-) (ssb) [Vibrio cholerae strain SO5Y]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRTQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=447480 HPY15_RS11860 WP_000168290.1 2622281..2622814(-) (ssb) [Vibrio cholerae strain SO5Y]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCTACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGCATCATGCAGATGCTGGGTGGTCGTACACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

98.87

100

0.989
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486