Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HPY15_RS11865 Genome accession   NZ_CP053800
Coordinates   2623106..2623750 (+) Length   214 a.a.
NCBI ID   WP_001188316.1    Uniprot ID   Q9KUW3
Organism   Vibrio cholerae strain SO5Y     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2618106..2628750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS11850 (HPY15_11860) - 2618693..2620132 (-) 1440 WP_000743255.1 PilN domain-containing protein -
  HPY15_RS11855 (HPY15_11865) csrD 2620145..2622157 (-) 2013 WP_032472224.1 RNase E specificity factor CsrD -
  HPY15_RS11860 (HPY15_11870) ssb 2622281..2622814 (-) 534 WP_000168290.1 single-stranded DNA-binding protein Machinery gene
  HPY15_RS11865 (HPY15_11875) qstR 2623106..2623750 (+) 645 WP_001188316.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY15_RS11870 (HPY15_11880) galU 2623923..2624795 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY15_RS11875 (HPY15_11885) uvrA 2624951..2627773 (+) 2823 WP_071179834.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24736.58 Da        Isoelectric Point: 9.6461

>NTDB_id=447481 HPY15_RS11865 WP_001188316.1 2623106..2623750(+) (qstR) [Vibrio cholerae strain SO5Y]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=447481 HPY15_RS11865 WP_001188316.1 2623106..2623750(+) (qstR) [Vibrio cholerae strain SO5Y]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAGTTGAATCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTAAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.523
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523