Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPY13_RS12040 Genome accession   NZ_CP053796
Coordinates   2648205..2648738 (-) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain SL4G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2643205..2653738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS12020 (HPY13_12020) - 2643660..2643977 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  HPY13_RS12025 (HPY13_12025) gspM 2643970..2644620 (-) 651 WP_094392771.1 type II secretion system protein GspM -
  HPY13_RS12030 (HPY13_12030) - 2644617..2646056 (-) 1440 WP_000743253.1 PilN domain-containing protein -
  HPY13_RS12035 (HPY13_12035) csrD 2646069..2648081 (-) 2013 WP_032472224.1 RNase E specificity factor CsrD -
  HPY13_RS12040 (HPY13_12040) ssb 2648205..2648738 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  HPY13_RS12045 (HPY13_12045) qstR 2649030..2649674 (+) 645 WP_094392772.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY13_RS12050 (HPY13_12050) galU 2649847..2650719 (+) 873 WP_175249833.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY13_RS12055 (HPY13_12055) uvrA 2650875..2653697 (+) 2823 WP_094392773.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=447387 HPY13_RS12040 WP_000168287.1 2648205..2648738(-) (ssb) [Vibrio cholerae strain SL4G]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=447387 HPY13_RS12040 WP_000168287.1 2648205..2648738(-) (ssb) [Vibrio cholerae strain SL4G]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACTTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGAAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGCATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486