Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HPY13_RS12045 Genome accession   NZ_CP053796
Coordinates   2649030..2649674 (+) Length   214 a.a.
NCBI ID   WP_094392772.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL4G     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2644030..2654674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS12030 (HPY13_12030) - 2644617..2646056 (-) 1440 WP_000743253.1 PilN domain-containing protein -
  HPY13_RS12035 (HPY13_12035) csrD 2646069..2648081 (-) 2013 WP_032472224.1 RNase E specificity factor CsrD -
  HPY13_RS12040 (HPY13_12040) ssb 2648205..2648738 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  HPY13_RS12045 (HPY13_12045) qstR 2649030..2649674 (+) 645 WP_094392772.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY13_RS12050 (HPY13_12050) galU 2649847..2650719 (+) 873 WP_175249833.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY13_RS12055 (HPY13_12055) uvrA 2650875..2653697 (+) 2823 WP_094392773.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24721.61 Da        Isoelectric Point: 9.6461

>NTDB_id=447388 HPY13_RS12045 WP_094392772.1 2649030..2649674(+) (qstR) [Vibrio cholerae strain SL4G]
MLRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=447388 HPY13_RS12045 WP_094392772.1 2649030..2649674(+) (qstR) [Vibrio cholerae strain SL4G]
ATGCTACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAGTTGAATCTACCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

99.533

100

0.995
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.523
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523