Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HPY13_RS04725 Genome accession   NZ_CP053796
Coordinates   1008893..1009204 (+) Length   103 a.a.
NCBI ID   WP_001166106.1    Uniprot ID   A0AAU8WU30
Organism   Vibrio cholerae strain SL4G     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1003893..1014204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS04710 (HPY13_04710) lon 1003930..1006290 (+) 2361 WP_001047611.1 endopeptidase La -
  HPY13_RS04715 (HPY13_04715) - 1006474..1006746 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  HPY13_RS04720 (HPY13_04720) ppiD 1006899..1008758 (+) 1860 WP_095487478.1 peptidylprolyl isomerase -
  HPY13_RS04725 (HPY13_04725) comEA 1008893..1009204 (+) 312 WP_001166106.1 ComEA family DNA-binding protein Machinery gene
  HPY13_RS04730 (HPY13_04730) cmk 1009387..1010064 (+) 678 WP_094391875.1 (d)CMP kinase -
  HPY13_RS04735 (HPY13_04735) rpsA 1010173..1011843 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  HPY13_RS04740 (HPY13_04740) ihfB 1012132..1012410 (+) 279 WP_000167341.1 integration host factor subunit beta -
  HPY13_RS04745 (HPY13_04745) - 1012549..1012830 (+) 282 WP_000691492.1 LapA family protein -
  HPY13_RS04750 (HPY13_04750) lapB 1012842..1014011 (+) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10957.76 Da        Isoelectric Point: 4.7228

>NTDB_id=447368 HPY13_RS04725 WP_001166106.1 1008893..1009204(+) (comEA) [Vibrio cholerae strain SL4G]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTQI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=447368 HPY13_RS04725 WP_001166106.1 1008893..1009204(+) (comEA) [Vibrio cholerae strain SL4G]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAAAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCAAATC
GATGATCTGACGAATGTAAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

99.029

100

0.99
  comEA Vibrio cholerae strain A1552

99.029

100

0.99
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437