Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPY12_RS12335 Genome accession   NZ_CP053794
Coordinates   2707501..2708034 (-) Length   177 a.a.
NCBI ID   WP_057567712.1    Uniprot ID   -
Organism   Vibrio cholerae strain W10G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2702501..2713034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY12_RS12315 (HPY12_12335) - 2702956..2703273 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  HPY12_RS12320 (HPY12_12340) gspM 2703266..2703916 (-) 651 WP_000835151.1 type II secretion system protein GspM -
  HPY12_RS12325 (HPY12_12345) - 2703913..2705352 (-) 1440 WP_000743253.1 PilN domain-containing protein -
  HPY12_RS12330 (HPY12_12350) csrD 2705365..2707377 (-) 2013 WP_001918202.1 RNase E specificity factor CsrD -
  HPY12_RS12335 (HPY12_12355) ssb 2707501..2708034 (-) 534 WP_057567712.1 single-stranded DNA-binding protein Machinery gene
  HPY12_RS12340 (HPY12_12360) qstR 2708326..2708970 (+) 645 WP_001188315.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY12_RS12345 (HPY12_12365) galU 2709143..2710015 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY12_RS12350 (HPY12_12370) uvrA 2710171..2712993 (+) 2823 WP_057567713.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19674.87 Da        Isoelectric Point: 5.7626

>NTDB_id=447338 HPY12_RS12335 WP_057567712.1 2707501..2708034(-) (ssb) [Vibrio cholerae strain W10G]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGSRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=447338 HPY12_RS12335 WP_057567712.1 2707501..2708034(-) (ssb) [Vibrio cholerae strain W10G]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGCATCATGCAGATGCTGGGTAGTCGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCGCAACAACCAGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

98.87

100

0.989
  ssb Glaesserella parasuis strain SC1401

52.747

100

0.542
  ssb Neisseria meningitidis MC58

47.222

100

0.48
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.48