Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HPY12_RS12340 Genome accession   NZ_CP053794
Coordinates   2708326..2708970 (+) Length   214 a.a.
NCBI ID   WP_001188315.1    Uniprot ID   -
Organism   Vibrio cholerae strain W10G     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2703326..2713970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY12_RS12325 (HPY12_12345) - 2703913..2705352 (-) 1440 WP_000743253.1 PilN domain-containing protein -
  HPY12_RS12330 (HPY12_12350) csrD 2705365..2707377 (-) 2013 WP_001918202.1 RNase E specificity factor CsrD -
  HPY12_RS12335 (HPY12_12355) ssb 2707501..2708034 (-) 534 WP_057567712.1 single-stranded DNA-binding protein Machinery gene
  HPY12_RS12340 (HPY12_12360) qstR 2708326..2708970 (+) 645 WP_001188315.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY12_RS12345 (HPY12_12365) galU 2709143..2710015 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY12_RS12350 (HPY12_12370) uvrA 2710171..2712993 (+) 2823 WP_057567713.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24708.52 Da        Isoelectric Point: 9.6461

>NTDB_id=447339 HPY12_RS12340 WP_001188315.1 2708326..2708970(+) (qstR) [Vibrio cholerae strain W10G]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQAQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=447339 HPY12_RS12340 WP_001188315.1 2708326..2708970(+) (qstR) [Vibrio cholerae strain W10G]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTAAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGCTCAAGCAACGGTCGATTTGACTGCACGTGAAATA
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGTTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.528