Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | HPY12_RS01310 | Genome accession | NZ_CP053794 |
| Coordinates | 278630..279220 (+) | Length | 196 a.a. |
| NCBI ID | WP_000157688.1 | Uniprot ID | A0A655VUM8 |
| Organism | Vibrio cholerae strain W10G | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 273630..284220
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY12_RS01295 (HPY12_01295) | - | 274427..276904 (-) | 2478 | WP_000668743.1 | penicillin-binding protein 1A | - |
| HPY12_RS01300 (HPY12_01300) | pilM | 277047..278063 (+) | 1017 | WP_001898302.1 | type IV pilus assembly protein PilM | Machinery gene |
| HPY12_RS01305 (HPY12_01305) | pilN | 278053..278637 (+) | 585 | WP_000902746.1 | PilN domain-containing protein | Machinery gene |
| HPY12_RS01310 (HPY12_01310) | pilO | 278630..279220 (+) | 591 | WP_000157688.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| HPY12_RS01315 (HPY12_01315) | pilP | 279210..279728 (+) | 519 | WP_057568694.1 | pilus assembly protein PilP | Machinery gene |
| HPY12_RS01320 (HPY12_01320) | pilQ | 279754..281469 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| HPY12_RS01325 (HPY12_01325) | aroK | 281656..282180 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| HPY12_RS01330 (HPY12_01330) | aroB | 282208..283293 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22891.30 Da Isoelectric Point: 4.4169
>NTDB_id=447309 HPY12_RS01310 WP_000157688.1 278630..279220(+) (pilO) [Vibrio cholerae strain W10G]
MASLQELELDEISEWPLLPQLLVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLLVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=447309 HPY12_RS01310 WP_000157688.1 278630..279220(+) (pilO) [Vibrio cholerae strain W10G]
ATGGCTAGTTTGCAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAACTGCTGGTGATTCTGCTTAT
CATGCTACTAATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATTCAAGCTCAGTTGGATGAG
CTCAAAGAGCGTTACGATTTTTTACTCCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTCCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTTTGCAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAACTGCTGGTGATTCTGCTTAT
CATGCTACTAATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATTCAAGCTCAGTTGGATGAG
CTCAAAGAGCGTTACGATTTTTTACTCCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTCCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
99.49 |
100 |
0.995 |
| pilO | Vibrio campbellii strain DS40M4 |
71.429 |
96.429 |
0.689 |