Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HPY12_RS01315 Genome accession   NZ_CP053794
Coordinates   279210..279728 (+) Length   172 a.a.
NCBI ID   WP_057568694.1    Uniprot ID   -
Organism   Vibrio cholerae strain W10G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274210..284728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY12_RS01295 (HPY12_01295) - 274427..276904 (-) 2478 WP_000668743.1 penicillin-binding protein 1A -
  HPY12_RS01300 (HPY12_01300) pilM 277047..278063 (+) 1017 WP_001898302.1 type IV pilus assembly protein PilM Machinery gene
  HPY12_RS01305 (HPY12_01305) pilN 278053..278637 (+) 585 WP_000902746.1 PilN domain-containing protein Machinery gene
  HPY12_RS01310 (HPY12_01310) pilO 278630..279220 (+) 591 WP_000157688.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPY12_RS01315 (HPY12_01315) pilP 279210..279728 (+) 519 WP_057568694.1 pilus assembly protein PilP Machinery gene
  HPY12_RS01320 (HPY12_01320) pilQ 279754..281469 (+) 1716 WP_000788426.1 type IV pilus secretin PilQ Machinery gene
  HPY12_RS01325 (HPY12_01325) aroK 281656..282180 (+) 525 WP_000818616.1 shikimate kinase AroK -
  HPY12_RS01330 (HPY12_01330) aroB 282208..283293 (+) 1086 WP_000439805.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19082.28 Da        Isoelectric Point: 10.0857

>NTDB_id=447310 HPY12_RS01315 WP_057568694.1 279210..279728(+) (pilP) [Vibrio cholerae strain W10G]
MKNKPLGLWLMSLLVLVGCKANQDDLISYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSVSALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447310 HPY12_RS01315 WP_057568694.1 279210..279728(+) (pilP) [Vibrio cholerae strain W10G]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAT
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTAGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGTGGCAGTGTCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGAAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

98.837

100

0.988
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564