Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   GE022_RS10465 Genome accession   NZ_CP053790
Coordinates   2149807..2151030 (+) Length   407 a.a.
NCBI ID   WP_164228720.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2144807..2156030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS10435 (GE022_010425) recF 2145255..2146358 (-) 1104 WP_164405496.1 DNA replication/repair protein RecF -
  GE022_RS10440 (GE022_010430) yaaA 2146360..2146773 (-) 414 WP_164228187.1 S4 domain-containing protein YaaA -
  GE022_RS10445 (GE022_010435) - 2146847..2147802 (-) 956 Protein_2019 IS30 family transposase -
  GE022_RS10450 (GE022_010440) - 2148061..2148795 (-) 735 WP_420853600.1 DDE-type integrase/transposase/recombinase -
  GE022_RS10460 (GE022_010450) rlmH 2149115..2149594 (-) 480 WP_003045866.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  GE022_RS10465 (GE022_010455) htrA 2149807..2151030 (+) 1224 WP_164228720.1 S1C family serine protease Regulator
  GE022_RS10470 (GE022_010460) spo0J 2151127..2151894 (+) 768 WP_159305311.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 407 a.a.        Molecular weight: 42632.03 Da        Isoelectric Point: 5.7603

>NTDB_id=447241 GE022_RS10465 WP_164228720.1 2149807..2151030(+) (htrA) [Streptococcus canis strain HL_77_2]
MPTMKHILKFLGITLIGFLGGILAIVTVNNTSQQSSSTSHSGSATTSKMVFNNTTDTTKAVNVIQNAVVSVINYQDDPSS
SLSNPYIKLFGEDQAKENKDAELTIFSEGSGVIYRKDGNSAYVVTNNHVIDGAKRIEILMADGSKVVGELVGADTYSDLA
VVKISSDKIKTIAEFADSSKLNVGEVAIAIGSPLGTQYANSVTEGIVSSLSRTVTLKNENGETVSTNAIQTDAAINPGNS
GGPLINIEGQVIGINSSKISSTPTGNNGNSGAVEGIGFAIPSSDVIKIIKQLETNGEVIRPALGISMVNLNDLSTNALRQ
INIPTSVTGGIVVASVQAGMPATGKLTQYDVITEIDGKSVNSISDLQSNLYGHNINDTIKVTFYRGTAKKKADIKLTKTT
QDLSKAQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=447241 GE022_RS10465 WP_164228720.1 2149807..2151030(+) (htrA) [Streptococcus canis strain HL_77_2]
ATGCCCACTATGAAACATATCTTAAAATTCTTAGGTATTACACTCATCGGATTTTTAGGAGGAATTTTGGCTATTGTTAC
AGTTAATAATACTAGTCAACAATCTTCTTCTACGTCACACTCAGGTAGTGCAACAACCAGTAAAATGGTTTTCAATAATA
CCACTGATACTACAAAAGCTGTTAACGTTATTCAAAATGCAGTGGTATCCGTTATTAATTATCAAGATGATCCTTCTTCA
TCTTTGTCTAATCCTTACATAAAACTTTTTGGAGAGGATCAGGCAAAAGAAAATAAGGATGCTGAACTAACAATTTTTAG
CGAAGGTTCTGGTGTCATTTATCGAAAAGACGGTAATTCTGCCTATGTTGTTACTAATAATCACGTTATTGATGGTGCTA
AGCGCATTGAAATCCTTATGGCTGATGGATCTAAAGTGGTTGGGGAATTAGTCGGCGCTGATACCTATTCTGACTTAGCA
GTTGTCAAAATTTCTTCTGATAAGATTAAAACAATCGCGGAATTTGCTGATTCAAGCAAACTTAATGTTGGAGAAGTAGC
TATTGCTATAGGTAGTCCTTTAGGAACTCAATATGCCAATTCTGTCACCGAAGGGATTGTTTCAAGTCTCAGTCGTACTG
TTACCTTAAAAAATGAAAATGGTGAAACTGTTTCAACCAATGCTATTCAAACAGACGCTGCCATTAATCCAGGAAACTCT
GGTGGTCCACTCATTAATATCGAAGGACAAGTCATCGGAATTAATTCAAGTAAAATTTCCTCTACACCAACTGGTAATAA
TGGTAATAGCGGAGCTGTCGAAGGAATCGGCTTTGCTATTCCATCTAGTGATGTTATCAAAATTATCAAGCAATTAGAAA
CCAATGGAGAAGTCATCAGACCTGCCCTTGGTATCTCTATGGTTAACTTAAATGATTTATCAACCAATGCCCTTCGTCAA
ATCAATATTCCAACCAGTGTGACAGGTGGGATTGTAGTCGCTTCTGTTCAAGCTGGCATGCCAGCTACAGGTAAACTTAC
TCAATACGATGTGATTACCGAAATCGATGGTAAATCCGTCAACTCAATTAGTGATCTTCAAAGTAATTTATATGGACACA
ACATTAATGATACTATCAAAGTAACCTTTTACAGAGGGACAGCAAAGAAAAAAGCAGACATCAAATTAACGAAGACTACA
CAAGATTTAAGTAAAGCGCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

60.794

99.017

0.602

  htrA Streptococcus mitis NCTC 12261

54.3

100

0.543

  htrA Streptococcus pneumoniae Rx1

54.3

100

0.543

  htrA Streptococcus pneumoniae D39

54.3

100

0.543

  htrA Streptococcus pneumoniae R6

54.3

100

0.543

  htrA Streptococcus pneumoniae TIGR4

54.3

100

0.543

  htrA Streptococcus gordonii str. Challis substr. CH1

54.975

98.771

0.543