Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   COO90_RS09600 Genome accession   NZ_CP053751
Coordinates   1990810..1991439 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella sonnei strain 506     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1985810..1996439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COO90_RS09580 (COO90_09495) - 1986213..1987973 (-) 1761 WP_000156526.1 Lon protease family protein -
  COO90_RS09585 (COO90_09500) matP 1988159..1988611 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  COO90_RS09590 (COO90_09505) ompA 1988687..1989727 (-) 1041 WP_000750416.1 porin OmpA -
  COO90_RS09595 (COO90_09510) sulA 1990082..1990591 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  COO90_RS09600 (COO90_09515) sxy/tfoX 1990810..1991439 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  COO90_RS09605 (COO90_09520) yccS 1991402..1993564 (-) 2163 WP_000875023.1 YccS family putative transporter -
  COO90_RS09610 (COO90_09525) - 1993574..1994020 (-) 447 WP_001261235.1 YccF domain-containing protein -
  COO90_RS09615 (COO90_09530) helD 1994143..1996197 (+) 2055 WP_039063438.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=446936 COO90_RS09600 WP_000839153.1 1990810..1991439(+) (sxy/tfoX) [Shigella sonnei strain 506]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=446936 COO90_RS09600 WP_000839153.1 1990810..1991439(+) (sxy/tfoX) [Shigella sonnei strain 506]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1