Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FX982_RS08195 Genome accession   NZ_CP053746
Coordinates   1805116..1806609 (-) Length   497 a.a.
NCBI ID   WP_172610283.1    Uniprot ID   A0A6M8MKM6
Organism   Pseudomonas graminis strain PgKB30     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1800116..1811609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX982_RS08180 (FX982_01643) - 1800188..1801570 (-) 1383 WP_172610281.1 NorM family multidrug efflux MATE transporter -
  FX982_RS08185 (FX982_01644) - 1801735..1802655 (+) 921 WP_133773820.1 LysR substrate-binding domain-containing protein -
  FX982_RS08190 (FX982_01645) - 1802874..1804850 (+) 1977 WP_172610282.1 methyl-accepting chemotaxis protein -
  FX982_RS08195 (FX982_01646) comM 1805116..1806609 (-) 1494 WP_172610283.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FX982_RS08200 (FX982_01647) - 1806812..1807096 (-) 285 WP_172610284.1 accessory factor UbiK family protein -
  FX982_RS08205 (FX982_01648) glnK 1807512..1807850 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  FX982_RS08210 (FX982_01649) - 1807885..1809222 (+) 1338 WP_037016614.1 ammonium transporter -
  FX982_RS08215 (FX982_01650) - 1809472..1809903 (+) 432 WP_122623534.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FX982_RS08220 (FX982_01651) - 1809997..1810326 (+) 330 WP_122534138.1 hypothetical protein -
  FX982_RS08225 (FX982_01652) - 1810436..1811131 (-) 696 WP_172610285.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53016.96 Da        Isoelectric Point: 7.3260

>NTDB_id=446820 FX982_RS08195 WP_172610283.1 1805116..1806609(-) (comM) [Pseudomonas graminis strain PgKB30]
MSLAIVLSRAQVGVEAPAVTVETHLANGLPSLTLVGLPEGAVKESKDRVRSAILNCRLEFPARRITLNLAPADLPKDGGR
FDVAIALGLLAASAQVPTLALEGIECLGELALSGAIRPVQGVLPAALAAREAGHTLIVPAVNAEEACLASGLKVIAVSHL
LELVSHLNGDTVIPPYKSNGLILQTQPYPDLSEVQGQTAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
LEALEVAAIQSVASHAPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYHGEPTGRCRCSTDQIQRYRNKLSGPLLDRIDLHLTVARETTSLAATADS
KGESASAAEVVSEARQRQQRRQGCANAFLDLPALRQHCALLPEDEAWLENACERLNLSLRAAHRLLKVARTLADLEKVDA
IARCHIAEALQYRPSTN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=446820 FX982_RS08195 WP_172610283.1 1805116..1806609(-) (comM) [Pseudomonas graminis strain PgKB30]
ATGTCCCTCGCGATCGTTCTGAGCCGTGCCCAGGTTGGCGTTGAAGCGCCTGCCGTGACCGTCGAAACCCATCTCGCCAA
CGGGCTGCCCAGCCTGACGCTGGTGGGTCTGCCGGAGGGCGCGGTCAAGGAGAGTAAGGACCGGGTGCGCAGCGCAATCC
TCAACTGTCGGCTGGAATTCCCGGCGCGGCGGATCACCCTGAATCTCGCCCCTGCCGATTTGCCCAAGGACGGCGGGCGC
TTCGATGTCGCCATCGCACTTGGCTTGCTCGCCGCCAGTGCGCAGGTGCCGACGCTTGCGTTGGAGGGCATCGAATGTCT
GGGGGAACTGGCGTTGTCGGGTGCGATTCGGCCCGTGCAGGGCGTGCTCCCGGCGGCGCTTGCTGCGCGGGAAGCAGGGC
ATACGCTGATCGTGCCGGCAGTGAATGCCGAGGAAGCGTGTCTGGCGTCAGGCTTGAAAGTAATCGCGGTCAGTCATCTG
CTGGAGCTGGTGTCACACTTGAATGGGGACACGGTTATCCCGCCCTATAAATCCAACGGCCTGATTCTGCAGACGCAGCC
TTATCCCGACTTGAGTGAGGTGCAAGGCCAGACCGCTGCCAAACGCGCGTTGCTGGTGGCCGCGGCCGGCGCGCATAACC
TGCTTTTCAGCGGTCCCCCCGGCACCGGCAAAACGCTGCTCGCCAGCCGTTTGCCAGGGCTGTTGCCGCCGCTGGATGAA
CTCGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGTCATGCGCCGCTGACCAGTTGGCCCCAGCGCCCTTTTCG
GCAACCCCATCACTCTGCATCGGGTCCTGCGTTGGTCGGGGGTGGCAGTCGCCCGCAACCTGGCGAGATCACCCTGGCGC
ACCACGGTGTGCTGTTTCTGGACGAACTTCCGGAATTTGATCGGCGGGTGCTGGAGGTGCTGCGCGAACCCCTTGAATCC
GGCCACATCGTCATTTCCCGCGCGCGGGATCGGGTGCGCTTTCCGGCGCGCTTTCAACTGGTCGCCGCGATGAACCCCTG
CCCGTGTGGTTATCACGGCGAGCCGACCGGGCGCTGCCGCTGCTCAACCGATCAGATTCAGCGCTATCGCAACAAGCTGT
CCGGACCGCTGCTCGACCGGATCGACCTGCATCTGACGGTCGCTCGGGAAACGACCTCCTTGGCCGCCACTGCAGACAGC
AAGGGTGAAAGCGCCAGCGCAGCGGAAGTGGTCTCCGAAGCCCGACAACGCCAACAACGGCGCCAGGGCTGTGCCAACGC
CTTTCTTGACCTGCCTGCGCTGCGTCAACACTGCGCGTTGCTGCCGGAAGACGAAGCCTGGCTCGAGAATGCGTGTGAAC
GCCTGAACCTGTCCCTGCGCGCTGCCCACCGCCTGCTGAAAGTGGCGCGCACGCTCGCTGATCTGGAGAAGGTGGACGCC
ATCGCCCGATGCCACATCGCCGAGGCGCTGCAGTATCGGCCTTCGACGAATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8MKM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.8

100

0.541
  comM Glaesserella parasuis strain SC1401

53.8

100

0.541
  comM Vibrio cholerae strain A1552

54.343

99.598

0.541
  comM Vibrio campbellii strain DS40M4

53.535

99.598

0.533
  comM Legionella pneumophila str. Paris

49.395

99.799

0.493
  comM Legionella pneumophila strain ERS1305867

49.395

99.799

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.627

100

0.473