Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   C270_RS02770 Genome accession   NC_018673
Coordinates   528256..529314 (+) Length   352 a.a.
NCBI ID   WP_014974036.1    Uniprot ID   K0D9D0
Organism   Leuconostoc carnosum JB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 523256..534314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C270_RS02740 (C270_02520) dltC 523801..524037 (+) 237 WP_014974030.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  C270_RS02745 (C270_02525) dltD 524042..525325 (+) 1284 WP_014974031.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  C270_RS02750 (C270_02530) - 525353..526072 (-) 720 WP_014974032.1 YslB family protein -
  C270_RS02755 (C270_02535) racE 526163..527008 (+) 846 WP_014974033.1 glutamate racemase -
  C270_RS02760 (C270_02540) - 527008..527613 (+) 606 WP_014974034.1 XTP/dITP diphosphatase -
  C270_RS02765 (C270_02545) - 527619..528155 (+) 537 WP_014974035.1 YfcE family phosphodiesterase -
  C270_RS02770 (C270_02550) ruvB 528256..529314 (+) 1059 WP_014974036.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  C270_RS02775 (C270_02555) - 529314..530171 (+) 858 WP_014974037.1 metallophosphoesterase family protein -
  C270_RS02780 (C270_02560) queA 530168..531235 (+) 1068 WP_014974038.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  C270_RS02785 (C270_02565) ruvA 531356..531940 (+) 585 WP_014974039.1 Holliday junction branch migration protein RuvA Machinery gene
  C270_RS02790 (C270_02570) - 531973..532605 (-) 633 WP_014974040.1 deoxynucleoside kinase -
  C270_RS02795 (C270_02575) mscL 532703..533086 (-) 384 WP_014974041.1 large-conductance mechanosensitive channel protein MscL -
  C270_RS02800 (C270_02580) - 533425..533613 (+) 189 WP_014974042.1 hypothetical protein -
  C270_RS02805 (C270_02585) - 533636..534127 (+) 492 WP_014974043.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39359.74 Da        Isoelectric Point: 4.5941

>NTDB_id=44657 C270_RS02770 WP_014974036.1 528256..529314(+) (ruvB) [Leuconostoc carnosum JB16]
MENQQEPQFNQWYETNSEADQLLRDAAANATEQHDELSLRPQFLREYIGQAALKDELSVYISAARQREEALDHVLLFGPP
GLGKTTLAMIIANEMGVNIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNIEEIMYSAMEDYFVDIMVGQGPT
ARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINAMAYYTSDELQEIVVRSSDIFNAPIKPEGAYEIALRSRGTPRIAN
RLLKRVRDFAQVQGKDAIDKGIVDIALDKLRVDNRGLDETDHKFLGTMIDYYNGGPVGLSTIAANIGEEAETLESMVEPY
LLQIGFLQRTPRGRVVTESAYRHLNVPYQKEL

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=44657 C270_RS02770 WP_014974036.1 528256..529314(+) (ruvB) [Leuconostoc carnosum JB16]
ATGGAAAATCAACAGGAACCACAATTTAATCAATGGTATGAGACGAATAGTGAGGCTGATCAACTGTTGCGTGATGCGGC
TGCCAATGCCACAGAACAACATGATGAGCTTTCTTTGCGACCACAATTTTTGCGTGAATATATAGGTCAAGCTGCCTTAA
AAGATGAATTAAGTGTTTATATTTCAGCGGCTAGGCAGCGTGAAGAGGCATTAGACCATGTGTTGCTTTTTGGACCACCC
GGATTAGGTAAAACAACATTGGCAATGATTATTGCTAATGAAATGGGTGTTAACATTAAAACAACATCTGGACCTGCCAT
TGAAAAACCTGGTGATTTAGTTGCGTTACTCAATGAATTAGAACCAGGGGATATTTTGTTTATTGATGAAATCCATCGGT
TACCAACTAACATCGAAGAAATTATGTATTCAGCCATGGAAGATTATTTTGTTGATATTATGGTGGGACAAGGTCCTACG
GCACGTGCGGTTCATTTTCCTTTACCACCGTTTACTCTCATCGGGGCGACAACACGTCCAGGGATGCTTTCTAAGCCATT
ACGTGATCGGTTTGGTATTATCAATGCGATGGCATATTATACATCAGATGAACTGCAAGAAATTGTCGTACGTTCATCAG
ATATTTTTAACGCACCTATCAAACCAGAAGGTGCCTACGAGATTGCCCTACGGTCGCGTGGTACACCACGTATCGCCAAT
CGATTGTTGAAACGTGTACGTGATTTTGCACAAGTTCAGGGTAAAGATGCCATTGATAAGGGAATTGTTGACATTGCCTT
AGATAAATTGCGTGTTGATAATCGTGGTTTAGATGAAACGGATCACAAATTTTTAGGTACGATGATTGATTATTATAATG
GCGGACCAGTGGGTCTAAGTACAATAGCGGCTAATATTGGTGAAGAGGCTGAAACCCTTGAATCAATGGTGGAACCTTAT
TTGTTACAGATTGGTTTTTTGCAACGGACACCACGCGGTCGTGTGGTGACAGAATCCGCATATAGACATCTCAATGTACC
CTATCAAAAGGAACTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(275-345)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(39-196)

RuvB AAA lid domain (AAA_lid_4)

(200-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0D9D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae R6

64.688

90.909

0.588
  ruvB Streptococcus pneumoniae D39

64.688

90.909

0.588
  ruvB Streptococcus pneumoniae TIGR4

64.375

90.909

0.585
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.856

92.898

0.565
  ruvB Synechocystis sp. PCC 6803

55.732

89.205

0.497
  ruvB Helicobacter pylori 26695

52.215

89.773

0.469

Multiple sequence alignment