Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   C270_RS02785 Genome accession   NC_018673
Coordinates   531356..531940 (+) Length   194 a.a.
NCBI ID   WP_014974039.1    Uniprot ID   K0DBU1
Organism   Leuconostoc carnosum JB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 526356..536940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C270_RS02760 (C270_02540) - 527008..527613 (+) 606 WP_014974034.1 XTP/dITP diphosphatase -
  C270_RS02765 (C270_02545) - 527619..528155 (+) 537 WP_014974035.1 YfcE family phosphodiesterase -
  C270_RS02770 (C270_02550) ruvB 528256..529314 (+) 1059 WP_014974036.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  C270_RS02775 (C270_02555) - 529314..530171 (+) 858 WP_014974037.1 metallophosphoesterase family protein -
  C270_RS02780 (C270_02560) queA 530168..531235 (+) 1068 WP_014974038.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  C270_RS02785 (C270_02565) ruvA 531356..531940 (+) 585 WP_014974039.1 Holliday junction branch migration protein RuvA Machinery gene
  C270_RS02790 (C270_02570) - 531973..532605 (-) 633 WP_014974040.1 deoxynucleoside kinase -
  C270_RS02795 (C270_02575) mscL 532703..533086 (-) 384 WP_014974041.1 large-conductance mechanosensitive channel protein MscL -
  C270_RS02800 (C270_02580) - 533425..533613 (+) 189 WP_014974042.1 hypothetical protein -
  C270_RS02805 (C270_02585) - 533636..534127 (+) 492 WP_014974043.1 PH domain-containing protein -
  C270_RS02810 (C270_02590) - 534120..535598 (+) 1479 WP_014974044.1 PH domain-containing protein -
  C270_RS02815 (C270_02595) rpsP 535687..536100 (+) 414 WP_014974045.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21207.23 Da        Isoelectric Point: 4.8704

>NTDB_id=44658 C270_RS02785 WP_014974039.1 531356..531940(+) (ruvA) [Leuconostoc carnosum JB16]
MYEYINGLVTNIYPAYLVIADRSGVGYKLFVANPYRFEQNVESHVYVEQVVRENELTLYGFIDENEKALFNKLINVSGIG
PKSALAILANGDSEGLVNAIANEDPTYLMQFPGVGKKTAQQIVLDLKGKLDDMAVSVGMPASKAKTNQALTDALEALESL
GYSAKEVAKLEKQLAANHDTTDGYIRSALKLLVK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=44658 C270_RS02785 WP_014974039.1 531356..531940(+) (ruvA) [Leuconostoc carnosum JB16]
GTGTACGAATATATCAATGGACTTGTTACGAATATCTATCCGGCTTATTTAGTGATTGCCGATCGTAGTGGTGTTGGCTA
TAAATTATTTGTGGCAAATCCTTATCGATTTGAGCAAAACGTTGAATCACACGTATATGTAGAGCAAGTAGTTCGTGAAA
ATGAGCTCACATTATATGGTTTTATTGATGAAAATGAAAAGGCTTTATTCAATAAATTGATCAACGTGTCAGGCATTGGA
CCTAAAAGTGCATTGGCAATTTTGGCGAATGGTGATTCAGAAGGACTAGTTAATGCCATAGCTAATGAAGATCCGACCTA
TTTAATGCAATTTCCTGGGGTTGGTAAAAAAACGGCTCAGCAAATTGTACTTGATTTGAAAGGTAAGTTGGATGACATGG
CAGTTTCAGTTGGTATGCCAGCTTCTAAAGCAAAAACAAATCAAGCGCTAACTGATGCATTAGAAGCCTTGGAGTCGTTA
GGCTACAGCGCAAAGGAAGTTGCAAAACTTGAGAAACAACTGGCTGCTAATCATGACACTACTGACGGTTATATTCGTTC
AGCTTTGAAATTACTGGTCAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-60)

Helix-hairpin-helix domain (HHH_5)

(70-127)

RuvA, C-terminal domain (RuvA_C)

(149-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DBU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

51

100

0.526
  ruvA Streptococcus pneumoniae R6

50.5

100

0.521
  ruvA Streptococcus pneumoniae D39

50.5

100

0.521
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.564

100

0.454

Multiple sequence alignment