Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BANAU_RS18085 Genome accession   NC_017061
Coordinates   3692297..3692986 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis YAU B9601-Y2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3687297..3697986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BANAU_RS18050 (BANAU_3446) - 3687495..3687977 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BANAU_RS18055 (BANAU_3447) flgM 3687992..3688258 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BANAU_RS18060 (BANAU_3448) - 3688328..3688747 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  BANAU_RS18065 comFC 3688821..3689510 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  BANAU_RS18070 (BANAU_3450) - 3689516..3689800 (-) 285 WP_014419011.1 late competence development ComFB family protein -
  BANAU_RS18075 (BANAU_3451) comFA 3689858..3691243 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  BANAU_RS18080 (BANAU_3452) - 3691351..3692199 (-) 849 WP_003151387.1 DegV family protein -
  BANAU_RS18085 (BANAU_3453) degU 3692297..3692986 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BANAU_RS18090 (BANAU_3454) degS 3693063..3694226 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BANAU_RS18095 (BANAU_3455) - 3694449..3695096 (+) 648 WP_007614107.1 YigZ family protein -
  BANAU_RS18100 (BANAU_3456) - 3695101..3696315 (+) 1215 WP_014419013.1 LCP family protein -
  BANAU_RS18105 (BANAU_3457) - 3696405..3697481 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=44645 BANAU_RS18085 WP_003219701.1 3692297..3692986(-) (degU) [Bacillus velezensis YAU B9601-Y2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=44645 BANAU_RS18085 WP_003219701.1 3692297..3692986(-) (degU) [Bacillus velezensis YAU B9601-Y2]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGCTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment