Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   HPC60_RS12210 Genome accession   NZ_CP053671
Coordinates   2392168..2392584 (-) Length   138 a.a.
NCBI ID   WP_025017137.1    Uniprot ID   A0A0A7T4D7
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2387168..2397584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS12170 (HPC60_06920) - 2387182..2388048 (+) 867 WP_025017140.1 RluA family pseudouridine synthase -
  HPC60_RS12175 (HPC60_06925) - 2388086..2388895 (-) 810 WP_014570791.1 metal ABC transporter permease -
  HPC60_RS12180 (HPC60_06930) - 2388888..2389625 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  HPC60_RS12185 (HPC60_06935) - 2389802..2390644 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  HPC60_RS12190 (HPC60_06940) - 2390641..2391078 (-) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  HPC60_RS12195 (HPC60_06945) comGG 2391168..2391452 (-) 285 WP_025017139.1 competence type IV pilus minor pilin ComGG Machinery gene
  HPC60_RS12200 (HPC60_06950) comGF 2391491..2391937 (-) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  HPC60_RS12205 (HPC60_06955) comGE 2391900..2392196 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  HPC60_RS12210 (HPC60_06960) comGD 2392168..2392584 (-) 417 WP_025017137.1 competence type IV pilus minor pilin ComGD Machinery gene
  HPC60_RS12215 (HPC60_06965) comGC 2392559..2392882 (-) 324 WP_032943614.1 competence type IV pilus major pilin ComGC Machinery gene
  HPC60_RS12220 (HPC60_06970) comGB 2392956..2394029 (-) 1074 WP_074453836.1 competence type IV pilus assembly protein ComGB Machinery gene
  HPC60_RS12225 (HPC60_06975) comGA 2393923..2394861 (-) 939 WP_031561106.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15904.63 Da        Isoelectric Point: 7.9841

>NTDB_id=446217 HPC60_RS12210 WP_025017137.1 2392168..2392584(-) (comGD) [Lactococcus lactis subsp. lactis strain G121]
MKNEILMTRAFTLLESLLVLLIISFITTLFSSEIIQTVHLFKGELFVLQFENFYKRSQEEAALLQKSESLVAKNQELICE
DRSITIPKEVAVKDFTVKFDDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=446217 HPC60_RS12210 WP_025017137.1 2392168..2392584(-) (comGD) [Lactococcus lactis subsp. lactis strain G121]
ATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTATTTCTTTTATCAC
AACTCTTTTTTCTTCAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCT
ATAAAAGGAGTCAAGAAGAGGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAA
GATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAG
CTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTA
AAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7T4D7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

67.391

100

0.674
  comYD Streptococcus gordonii str. Challis substr. CH1

40.458

94.928

0.384
  comYD Streptococcus mutans UA140

39.844

92.754

0.37
  comYD Streptococcus mutans UA159

39.844

92.754

0.37