Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0335_RS21820 Genome accession   NZ_CP053572
Coordinates   4564833..4565366 (-) Length   177 a.a.
NCBI ID   WP_063988542.1    Uniprot ID   -
Organism   Serratia marcescens strain S7.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4559833..4570366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0335_RS21790 (F0335_21810) - 4560157..4561518 (-) 1362 WP_149559096.1 NCS2 family permease -
  F0335_RS21795 (F0335_21815) - 4561851..4562258 (-) 408 WP_038874298.1 VOC family protein -
  F0335_RS21800 (F0335_21820) - 4562306..4562974 (-) 669 WP_049201475.1 glutathione S-transferase family protein -
  F0335_RS21805 (F0335_21825) - 4562971..4563414 (-) 444 WP_047570370.1 lipocalin-like domain-containing protein -
  F0335_RS21810 (F0335_21830) - 4563611..4563871 (+) 261 WP_025304435.1 YdgH/BhsA/McbA-like domain containing protein -
  F0335_RS21815 (F0335_21835) - 4564021..4564770 (+) 750 WP_149559097.1 3-oxoacyl-ACP reductase family protein -
  F0335_RS21820 (F0335_21840) ssb 4564833..4565366 (-) 534 WP_063988542.1 single-stranded DNA-binding protein SSB1 Machinery gene
  F0335_RS21825 (F0335_21845) uvrA 4565644..4568472 (+) 2829 WP_149559098.1 excinuclease ABC subunit UvrA -
  F0335_RS21830 (F0335_21850) - 4568702..4569754 (+) 1053 WP_063988540.1 NAD(P)-dependent alcohol dehydrogenase -
  F0335_RS21835 (F0335_21855) maa 4569786..4570343 (-) 558 WP_041036886.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18781.73 Da        Isoelectric Point: 5.2456

>NTDB_id=445216 F0335_RS21820 WP_063988542.1 4564833..4565366(-) (ssb) [Serratia marcescens strain S7.1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=445216 F0335_RS21820 WP_063988542.1 4564833..4565366(-) (ssb) [Serratia marcescens strain S7.1]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGCAAGGGCTCTCAAGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGACCGATCAGTCCGGCGTGGAAAAATATACCACCGAAGTGGTGGTTAACGTCGG
TGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.763
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.599
  ssb Neisseria meningitidis MC58

46.524

100

0.492
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362