Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HND92_RS00935 Genome accession   NZ_CP053553
Coordinates   214569..216107 (-) Length   512 a.a.
NCBI ID   WP_172205339.1    Uniprot ID   A0A6M6I1B4
Organism   Diaphorobacter sp. JS3050     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 209569..221107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HND92_RS00915 (HND92_00915) - 210015..210794 (+) 780 WP_172205327.1 ABC transporter ATP-binding protein -
  HND92_RS00920 (HND92_00920) - 210825..211742 (-) 918 WP_172205330.1 LysR family transcriptional regulator -
  HND92_RS00925 (HND92_00925) - 211851..212660 (+) 810 WP_172205333.1 SDR family NAD(P)-dependent oxidoreductase -
  HND92_RS00930 (HND92_00930) - 212731..214464 (-) 1734 WP_172205336.1 methyl-accepting chemotaxis protein -
  HND92_RS00935 (HND92_00935) comM 214569..216107 (-) 1539 WP_172205339.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HND92_RS00940 (HND92_00940) - 216327..217058 (+) 732 WP_172205344.1 TorF family putative porin -
  HND92_RS00945 (HND92_00945) glnK 217079..217417 (+) 339 WP_011803632.1 P-II family nitrogen regulator -
  HND92_RS00950 (HND92_00950) - 217464..218891 (+) 1428 WP_172205347.1 ammonium transporter -
  HND92_RS00955 (HND92_00955) - 219033..219983 (+) 951 WP_172205350.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53580.41 Da        Isoelectric Point: 7.7842

>NTDB_id=445092 HND92_RS00935 WP_172205339.1 214569..216107(-) (comM) [Diaphorobacter sp. JS3050]
MSLALVQSRALLGLHAPAVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPANKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLDGWEFAGELSLSGLLRPVRGALATSLALRALAQPVRTVLPPGSAEEAALVPGTEIYRA
HHLLDVVRQFVPVPPPNDDGADDGGWQRLQPAPPAPATDGPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLA
QRFAGLLPPMGVEQALESAAIASLAGRFTPAQWMQRTTASPHHSCSAIALVGGGSPPRPGEISLAHEGVLFLDEFPEFAR
SALEALREPLESGRITIARAAQRAEFPARFQLVAAMNPCPCGFAGSHQRACRCTPDQIARYQGKLSGPLLDRIDLHVEVP
ALPPEELLGAPPGEPSGAVRERVARAHERALQRQGKANQALQGQELEQMAALDAPAARFLQAAAARLAWSARSTHRALKV
ARTIADLSGCGTVGAAHVAEAVQYRRVLRAPA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=445092 HND92_RS00935 WP_172205339.1 214569..216107(-) (comM) [Diaphorobacter sp. JS3050]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCACGCGCCCGCCGTTACGGTGGAAGTACACCTGGCGAA
CGGGTTGCCCAGCTTCGCGCTGGTGGGCCTGGCCGATGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCCGCGCTGC
AGAACGCCGGGCTGGAATTCCCGGCCAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGATCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCGAGCGGGCAGATCGACGCGGCCCGGTTGGACGGCTGGGAGTT
CGCCGGCGAGCTATCGCTGTCGGGCCTGCTGCGCCCGGTGCGCGGCGCCCTGGCGACCAGCTTGGCGCTGCGCGCGCTGG
CGCAGCCCGTACGCACGGTGCTTCCCCCCGGCAGCGCCGAAGAAGCTGCGCTGGTGCCGGGCACCGAGATCTACCGCGCG
CACCACCTGTTGGACGTGGTACGCCAGTTCGTGCCCGTGCCCCCGCCGAACGATGATGGCGCGGACGACGGCGGTTGGCA
GCGGCTGCAACCCGCGCCGCCGGCCCCGGCCACCGATGGCCCGGACCTGGCCGACGTGAAGGGGCAGGCCGCGGCCAAGC
GCGCACTGGAGATCGCTGCCGCAGGCGGGCACGGGCTGCTGCTCGTGGGGCCCCCGGGCTCGGGCAAGTCCATGCTGGCC
CAGCGTTTTGCCGGGCTGCTGCCCCCGATGGGGGTGGAGCAAGCGCTGGAGAGCGCGGCCATTGCCAGCCTGGCCGGGCG
CTTCACCCCCGCGCAGTGGATGCAGCGCACCACAGCCAGCCCGCACCACAGCTGCAGCGCGATCGCGCTGGTGGGTGGGG
GCTCGCCGCCGCGCCCGGGCGAGATCTCGCTCGCGCACGAAGGCGTGCTGTTCCTCGATGAATTCCCCGAATTCGCCCGC
AGCGCCCTGGAGGCGCTGCGCGAGCCGCTGGAGAGCGGGCGCATCACCATTGCCCGGGCGGCGCAGCGCGCCGAGTTCCC
GGCGCGCTTTCAGCTCGTGGCGGCCATGAACCCCTGCCCCTGTGGTTTTGCGGGCTCGCACCAGCGCGCCTGCCGCTGCA
CACCCGACCAGATCGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAGGTGCCC
GCGCTGCCGCCCGAGGAACTGCTGGGCGCCCCGCCCGGCGAACCCAGCGGCGCCGTGCGCGAACGCGTGGCCCGCGCGCA
CGAACGAGCGCTCCAGCGCCAGGGCAAGGCCAACCAGGCATTGCAGGGCCAGGAGCTGGAACAGATGGCGGCGCTGGACG
CGCCGGCCGCGCGGTTCCTGCAGGCCGCGGCGGCGCGCCTGGCGTGGTCGGCGCGCAGCACGCACCGGGCCCTCAAGGTT
GCACGTACTATTGCCGATCTATCGGGCTGCGGGACCGTGGGCGCCGCCCATGTGGCCGAAGCCGTGCAATACCGGCGCGT
CCTGCGCGCACCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M6I1B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.132

100

0.525
  comM Haemophilus influenzae Rd KW20

50.769

100

0.516
  comM Vibrio campbellii strain DS40M4

50.485

100

0.508
  comM Glaesserella parasuis strain SC1401

50.098

99.414

0.498
  comM Legionella pneumophila str. Paris

48.544

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.544

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.023

100

0.434