Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HOO69_RS12105 Genome accession   NZ_CP053541
Coordinates   2640998..2641534 (-) Length   178 a.a.
NCBI ID   WP_069667424.1    Uniprot ID   A0AAE5LJP0
Organism   Vibrio europaeus strain NPI-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2635998..2646534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS12085 (HOO69_12125) - 2636398..2636721 (-) 324 WP_069667428.1 MSHA biogenesis protein MshK -
  HOO69_RS12090 (HOO69_12130) gspM 2636714..2637364 (-) 651 WP_069667427.1 type II secretion system protein GspM -
  HOO69_RS12095 (HOO69_12135) - 2637364..2638806 (-) 1443 WP_171802123.1 MSHA biogenesis protein MshI -
  HOO69_RS12100 (HOO69_12140) csrD 2638815..2640833 (-) 2019 WP_171802124.1 RNase E specificity factor CsrD -
  HOO69_RS12105 (HOO69_12145) ssb 2640998..2641534 (-) 537 WP_069667424.1 single-stranded DNA-binding protein Machinery gene
  HOO69_RS12110 (HOO69_12150) qstR 2641818..2642468 (+) 651 WP_171802125.1 LuxR C-terminal-related transcriptional regulator Regulator
  HOO69_RS12115 (HOO69_12155) galU 2642587..2643462 (+) 876 WP_171802126.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HOO69_RS12120 (HOO69_12160) uvrA 2643604..2646426 (+) 2823 WP_171802127.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19597.69 Da        Isoelectric Point: 5.2157

>NTDB_id=445059 HOO69_RS12105 WP_069667424.1 2640998..2641534(-) (ssb) [Vibrio europaeus strain NPI-1]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPGQGMGQQQQPQQGGWGQPQQPAMQHQPAQQPQSQPQQ
AQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=445059 HOO69_RS12105 WP_069667424.1 2640998..2641534(-) (ssb) [Vibrio europaeus strain NPI-1]
ATGGCTAGCCGTGGAGTTAACAAAGTTATTTTAGTCGGTAATCTGGGCTCTGACCCAGAAGTACGTTACATGCCAAGTGG
CGGTGCTGTAGCCAATATTACTATCGCAACGTCTGAATCGTGGCGTGATAAAGCCACTGGTGAACAGCGTGAAAAAACGG
AATGGCACCGTGTTGCACTATTTGGCAAGTTAGCTGAAGTTGCTGGTGAGTATCTACGTAAGGGTTCTCAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAGTGGCAAGACCAAAGTGGTCAAGACCGCTACACAACAGAAGTTGTAGTTCAAGGCTT
TAACGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCAGGTCAAGGTATGGGCCAACAGCAGCAACCTC
AACAAGGTGGGTGGGGACAACCTCAGCAGCCTGCAATGCAGCATCAACCTGCTCAACAGCCGCAGTCACAACCACAACAA
GCTCAGCCACAGTACAATGAGCCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

85

100

0.86
  ssb Glaesserella parasuis strain SC1401

56.316

100

0.601
  ssb Neisseria meningitidis MC58

47.826

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.826

100

0.494