Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HOO69_RS12110 Genome accession   NZ_CP053541
Coordinates   2641818..2642468 (+) Length   216 a.a.
NCBI ID   WP_171802125.1    Uniprot ID   A0AAE7AXX1
Organism   Vibrio europaeus strain NPI-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2636818..2647468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS12095 (HOO69_12135) - 2637364..2638806 (-) 1443 WP_171802123.1 MSHA biogenesis protein MshI -
  HOO69_RS12100 (HOO69_12140) csrD 2638815..2640833 (-) 2019 WP_171802124.1 RNase E specificity factor CsrD -
  HOO69_RS12105 (HOO69_12145) ssb 2640998..2641534 (-) 537 WP_069667424.1 single-stranded DNA-binding protein Machinery gene
  HOO69_RS12110 (HOO69_12150) qstR 2641818..2642468 (+) 651 WP_171802125.1 LuxR C-terminal-related transcriptional regulator Regulator
  HOO69_RS12115 (HOO69_12155) galU 2642587..2643462 (+) 876 WP_171802126.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HOO69_RS12120 (HOO69_12160) uvrA 2643604..2646426 (+) 2823 WP_171802127.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25042.06 Da        Isoelectric Point: 8.7415

>NTDB_id=445060 HOO69_RS12110 WP_171802125.1 2641818..2642468(+) (qstR) [Vibrio europaeus strain NPI-1]
MAKNIYARTIYFLTENKSVNPIIERLERRMEIAIPTMAPDDLLLALQQYKHRILIIDYQEYTQLKNVISELPLADKSFET
IIFNVSHRLTTDELLAFGHLKAVFYQDLDIEQLVKGYEGVINGETWLPRKVTAQLLFHYRNVVDTHTTPATVDLTTREMQ
ILRCLMSGTSNTQIADDMFISEFTVKSHLQKVFKKLSVKNRVQAAAWAKQHMRPLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=445060 HOO69_RS12110 WP_171802125.1 2641818..2642468(+) (qstR) [Vibrio europaeus strain NPI-1]
ATGGCTAAAAACATCTATGCACGAACTATTTACTTTCTCACAGAAAACAAGTCTGTAAATCCAATCATTGAACGTTTAGA
GAGACGAATGGAGATCGCTATTCCGACAATGGCACCCGATGATTTGTTACTCGCCCTACAGCAGTATAAACACCGCATCC
TAATTATTGATTACCAAGAATACACCCAACTCAAAAACGTGATTAGTGAACTCCCATTGGCAGACAAATCATTTGAAACC
ATCATTTTTAATGTCTCTCATCGCTTGACCACTGACGAGCTATTGGCATTTGGTCACTTGAAAGCAGTCTTCTATCAAGA
CTTAGACATAGAGCAACTCGTCAAGGGGTATGAAGGGGTTATCAATGGTGAAACTTGGTTACCAAGAAAAGTTACGGCGC
AGTTACTGTTCCACTACCGTAATGTGGTTGACACCCATACGACTCCCGCAACTGTCGACTTGACCACTAGAGAAATGCAG
ATCCTACGTTGTTTAATGTCTGGAACTTCCAATACCCAAATCGCAGACGATATGTTTATCAGTGAGTTCACCGTTAAATC
TCATTTGCAGAAGGTTTTTAAGAAATTAAGCGTCAAGAATCGCGTTCAAGCGGCAGCTTGGGCAAAACAACATATGAGAC
CACTGTCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

52.358

98.148

0.514
  qstR Vibrio parahaemolyticus RIMD 2210633

51.887

98.148

0.509
  qstR Vibrio cholerae strain A1552

48.357

98.611

0.477