Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   HLV59_RS17610 Genome accession   NZ_CP053391
Coordinates   3767259..3768392 (+) Length   377 a.a.
NCBI ID   WP_171430469.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3762259..3773392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS17585 - 3762515..3762721 (-) 207 WP_031947118.1 hypothetical protein -
  HLV59_RS17590 - 3762775..3764889 (-) 2115 WP_171430466.1 TonB-dependent copper receptor -
  HLV59_RS17595 - 3764962..3765387 (-) 426 WP_171430467.1 DUF2946 family protein -
  HLV59_RS17600 def 3765431..3765961 (-) 531 WP_061875245.1 peptide deformylase -
  HLV59_RS17605 tsaP 3766084..3767238 (+) 1155 WP_171430468.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HLV59_RS17610 dprA 3767259..3768392 (+) 1134 WP_171430469.1 DNA-processing protein DprA Machinery gene
  HLV59_RS17615 - 3768444..3769013 (+) 570 WP_016144056.1 L-threonylcarbamoyladenylate synthase -
  HLV59_RS17620 - 3769406..3770326 (-) 921 WP_171430470.1 DMT family transporter -
  HLV59_RS17625 - 3770431..3771084 (-) 654 WP_081409505.1 TetR/AcrR family transcriptional regulator -
  HLV59_RS17630 - 3771220..3772434 (+) 1215 WP_171430471.1 MFS transporter -
  HLV59_RS17635 - 3772456..3773220 (+) 765 WP_171430472.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41801.40 Da        Isoelectric Point: 6.6176

>NTDB_id=444713 HLV59_RS17610 WP_171430469.1 3767259..3768392(+) (dprA) [Acinetobacter lactucae isolate QL-1]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGNCEKAVQPVNLVQWSNLGLHANHLKRVAEFQTAQGQAQFEKLIQQI
HQHTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASVHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQGSTEEAIVSSTSEI
PEHLVNLYQSLDWVGQDIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=444713 HLV59_RS17610 WP_171430469.1 3767259..3768392(+) (dprA) [Acinetobacter lactucae isolate QL-1]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTTCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAACTGCGAAAAAGCAGTCCAACCAGTTAATTTGGTACAGTGGTCAAATCTTGGTTTAC
ATGCTAATCATTTAAAACGTGTAGCTGAATTCCAAACTGCTCAAGGTCAAGCTCAGTTTGAAAAACTGATTCAGCAGATC
CATCAGCATACTGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAATTATTACCTTATACTGATCACCCCCC
TATCATTTTTGGAAAAGGTCAGGCACAAGCCTTATTACAACCACAAATTGCGATTGTGGGTAGTCGAAAACCAAGCCCGC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTACTACTTAAGTGAAAAAGGATTTTATGTAAGTAGTGGCTTGGCATATGGG
ATTGACGAAGCTGCTCATCAAGGTGCTTCAGTACATCAACGCACAATTGCTGTCACAGGAACAGGTCTAGACAGTACCTA
TCCTGCTCAGAATAAAAAACTTGCAGAACATATCTTGGCTCAAAACGGCGCCATCATTACTGAGTTTTTACCCGGTACAC
CACCATTACAGCAGCATTTCCCACGTAGAAACCGAATTGTTAGTGGTTTGAGTTTAGGAGTACTCGTCGTAGAAGCGACG
TTAAAAAGTGGCTCTCTCATCACAGCGAATAAAGCTGCTGAGCAAGGTAAAACCGTATTTGCTATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTCATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAGATTATTGAAG
ACCTTGCTTTACCTACCCAATGGCAAAGTCAGCAACAAGGCTCAACTGAGGAAGCAATAGTTTCTAGTACCTCAGAAATT
CCTGAGCATTTAGTTAATCTTTATCAGTCTTTAGATTGGGTTGGACAAGATATTGACCAGCTTGTTTTGCATCACTCTCA
ACCTGTGGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGTTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.716

100

0.907

  dprA Acinetobacter baumannii strain A118

90.451

100

0.905

  dprA Acinetobacter baylyi ADP1

71.391

100

0.721

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387

  dprA Vibrio campbellii strain DS40M4

41.228

90.716

0.374