Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   HLV59_RS17605 Genome accession   NZ_CP053391
Coordinates   3766084..3767238 (+) Length   384 a.a.
NCBI ID   WP_171430468.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3761084..3772238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS17580 - 3761233..3762447 (+) 1215 WP_125699640.1 oxygenase MpaB family protein -
  HLV59_RS17585 - 3762515..3762721 (-) 207 WP_031947118.1 hypothetical protein -
  HLV59_RS17590 - 3762775..3764889 (-) 2115 WP_171430466.1 TonB-dependent copper receptor -
  HLV59_RS17595 - 3764962..3765387 (-) 426 WP_171430467.1 DUF2946 family protein -
  HLV59_RS17600 def 3765431..3765961 (-) 531 WP_061875245.1 peptide deformylase -
  HLV59_RS17605 tsaP 3766084..3767238 (+) 1155 WP_171430468.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HLV59_RS17610 dprA 3767259..3768392 (+) 1134 WP_171430469.1 DNA-processing protein DprA Machinery gene
  HLV59_RS17615 - 3768444..3769013 (+) 570 WP_016144056.1 L-threonylcarbamoyladenylate synthase -
  HLV59_RS17620 - 3769406..3770326 (-) 921 WP_171430470.1 DMT family transporter -
  HLV59_RS17625 - 3770431..3771084 (-) 654 WP_081409505.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42576.40 Da        Isoelectric Point: 7.2978

>NTDB_id=444712 HLV59_RS17605 WP_171430468.1 3766084..3767238(+) (tsaP) [Acinetobacter lactucae isolate QL-1]
MKKVFDGMVQFHALGIKKHLLAFALFTGVAFGTVAEGYAASPNHNPPSLKSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCIGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPADAIEHTPYIVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVIPEEEATLPTLFYPVNATQVTDGGKIIRVMGSIGTAGKDSVVTLDRGTVQGVQVGQ
VFDITQQGETIRDPKTKESIKLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVSSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=444712 HLV59_RS17605 WP_171430468.1 3766084..3767238(+) (tsaP) [Acinetobacter lactucae isolate QL-1]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTCGCACTTTTTAC
AGGGGTTGCATTTGGTACGGTAGCAGAGGGTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAAAAGTAATGCAC
CACATGTCTACGTAGTAAAACGGGGAGATACACTCTGGGATATTTCCGGTCACTTTCTCAGTAAACCTTGGCGCTGGCCT
GAAATCTGGGCAAATAATCAACATGTCAAAAATCCGCACTGGATTTATCCGGGTGATCGGTTACTGCTATGTAGTTTAGA
TGGCCGTCCATTGGTTGGGAAAGATGAGGGAGATGGTTGTATCGGCATTATTCGCCGTTACACAGGTCAAATGACAAATT
TACAACCCCAAGTACGTGTGGAGTCACTAAACAATAACGTACCTGTTATTCCTCTTGAGCATATTAAACAGTGGTTAGAA
CACAGTACTATTCTACCAGCCGATGCAATTGAACATACTCCTTATATAGTTGGTACTGCCGATCAACGTGTACTCGCGGC
AAAAGGTCAAACTATTTATGCACGCGGACAAGGTTTAATTGATGGCCAACGTTATGCAGTCTACCGTGAAGGTGAACCTT
ATTATTTCACCGATAATAAAGGCAAAAAGCACAGTCTAGGTATTGAGCTACAACAAGTTGCCTCGGGCATCGCTATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGACAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTGATACCAGA
AGAAGAGGCTACATTGCCTACTTTATTTTATCCGGTGAATGCTACTCAGGTGACGGATGGCGGCAAAATTATTCGTGTAA
TGGGATCAATTGGTACTGCTGGCAAAGATAGTGTAGTGACTTTGGACAGAGGTACTGTACAAGGTGTTCAAGTAGGTCAA
GTTTTTGATATTACGCAGCAAGGTGAAACCATTCGAGATCCTAAAACAAAAGAATCAATAAAGTTACCTGGACAACAAAT
TGGTAGCTTAATGGTTTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTA
GTTCAAGCATTCAGCCACCCCGCTTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

88.802

100

0.888