Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HLV59_RS17395 Genome accession   NZ_CP053391
Coordinates   3720019..3721506 (+) Length   495 a.a.
NCBI ID   WP_171430450.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3715019..3726506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS17370 ribD 3715934..3717019 (-) 1086 WP_171430449.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  HLV59_RS17375 nrdR 3717035..3717493 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  HLV59_RS17380 - 3717657..3719051 (-) 1395 WP_016144094.1 ammonium transporter -
  HLV59_RS17385 glnK 3719109..3719447 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  HLV59_RS17390 - 3719726..3719953 (+) 228 WP_031947150.1 accessory factor UbiK family protein -
  HLV59_RS17395 comM 3720019..3721506 (+) 1488 WP_171430450.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HLV59_RS17400 - 3721521..3722954 (-) 1434 WP_171430451.1 PLP-dependent aminotransferase family protein -
  HLV59_RS17405 - 3723066..3723842 (+) 777 WP_171430452.1 aldolase -
  HLV59_RS17410 - 3723859..3724737 (+) 879 WP_171430453.1 dihydrodipicolinate synthase family protein -
  HLV59_RS17415 - 3724781..3725593 (-) 813 WP_031947143.1 TorF family putative porin -
  HLV59_RS17420 - 3725650..3725820 (-) 171 WP_151748503.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54561.67 Da        Isoelectric Point: 7.3650

>NTDB_id=444711 HLV59_RS17395 WP_171430450.1 3720019..3721506(+) (comM) [Acinetobacter lactucae isolate QL-1]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPDLECYPVNHL
KEVCEHFLGTKSLSLIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQFAVLDNTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLARSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=444711 HLV59_RS17395 WP_171430450.1 3720019..3721506(+) (comM) [Acinetobacter lactucae isolate QL-1]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTAAGTCA
AGGCTTGCCTTCTCTTACCATTGTCGGGCTAGCAGAAGCGGCGGTAAGAGAAAGTAAAGATCGGGTTCGCTCGGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAACGGCTGACCATTAACCTTGCACCAGCAGATTTGCCCAAAGATGGGTCACGT
CTAGATTTACCGATTGCCATAGGCATTTTAATTGCGTCTGGTCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCGCTCGATGGCCATGTAAGGCCCGTCTCAGGTACTTTAACTTTGGCAATGGCGTGTCAACAAGCCAAGC
ATAAAATGCTTTTACCTCTCGATAATAGTCAGGATATTAGCCACTTACCTGACCTTGAATGTTATCCGGTGAACCACTTA
AAAGAAGTGTGTGAACATTTTCTGGGCACAAAATCGCTATCTTTGATTGAACCTGCAACGACTTCAAACCAAATGCCCTA
TAAATTTGATCTGGCAGATGTGAAAGGTCAGCTACGCCCACGTCGCGCACTAGAAATAGCTGCCGCAGGAGGTCATTCTC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGCCTTCCTTCAATTTTACCGCCGCTTTCTAAT
CAAGAAACGCTTGAAGTTGCGAGTATTTATTCCATTTCAAATACACCGCATACGTTTGGCCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTGGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTGCTCTTTTTAGATGAACTTCCAGAGTTTGATAGAAAAGTGCTAGAAGTCTTGCGCCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACCTACCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCCTGCCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAATGTTCACCAGAGAGTATTAAACGTTATCAAAACCGTATATCGGGGC
CGTTACTCGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA
GACTCTACGGCTGTAAGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCAAAACAACTAGAACAATTTGCTGTTCTAGATAATACGTCGCAACGCATGATTGAAATGGCTCAGCAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGAGTAGCTCGTACCATTGCCGATTTGGCTCGAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

49.699

100

0.501
  comM Haemophilus influenzae Rd KW20

49.299

100

0.497
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.081

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.475