Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HLV59_RS01585 Genome accession   NZ_CP053391
Coordinates   338007..338435 (+) Length   142 a.a.
NCBI ID   WP_171429200.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333007..343435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS01565 - 334391..335278 (+) 888 WP_171429196.1 metal-dependent hydrolase -
  HLV59_RS01570 - 335409..335999 (+) 591 WP_039765214.1 LemA family protein -
  HLV59_RS01575 - 336021..337103 (+) 1083 WP_171429197.1 YgcG family protein -
  HLV59_RS01580 - 337097..337657 (+) 561 WP_171429198.1 TPM domain-containing protein -
  HLV59_RS01585 pilA 338007..338435 (+) 429 WP_171429200.1 pilin Machinery gene
  HLV59_RS01590 - 338489..339802 (+) 1314 WP_125698037.1 O-antigen ligase -
  HLV59_RS01595 - 339906..341534 (+) 1629 WP_171429201.1 PglL family O-oligosaccharyltransferase -
  HLV59_RS01600 bfr 341579..342043 (-) 465 WP_016143648.1 bacterioferritin -
  HLV59_RS01605 - 342287..342481 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  HLV59_RS01610 - 342701..343084 (-) 384 WP_002116996.1 RidA family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14570.64 Da        Isoelectric Point: 7.7783

>NTDB_id=444675 HLV59_RS01585 WP_171429200.1 338007..338435(+) (pilA) [Acinetobacter lactucae isolate QL-1]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQNYIARSQASEAFTLADGLKTTINTNLQAGTCFAGGANAATAADKVGGKY
GEAVIGGSAPSCTITYTFKSSGVSNKLTSKKIGMNVSETGILTKNSDTDAPVELLPQSFTAS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=444675 HLV59_RS01585 WP_171429200.1 338007..338435(+) (pilA) [Acinetobacter lactucae isolate QL-1]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCAGCAATTGCGAT
TCCACAGTATCAAAATTATATTGCTAGATCTCAAGCATCTGAAGCATTTACTTTAGCAGATGGATTGAAAACAACGATTA
ATACTAATCTACAAGCTGGAACTTGTTTTGCAGGTGGCGCTAATGCAGCAACAGCAGCTGATAAAGTAGGTGGTAAATAT
GGGGAAGCAGTGATTGGTGGTTCAGCTCCGAGCTGTACAATTACCTACACATTTAAATCTTCAGGTGTATCAAATAAGCT
TACATCTAAAAAGATTGGAATGAATGTAAGTGAAACAGGTATCCTGACAAAAAATAGTGATACGGATGCACCAGTTGAGT
TACTTCCACAATCTTTTACAGCTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

90.141

100

0.901
  pilA Acinetobacter baumannii strain A118

44.138

100

0.451
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40.411

100

0.415
  pilA Vibrio cholerae strain A1552

40.411

100

0.415
  pilA Vibrio cholerae C6706

40.411

100

0.415