Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   UMN798_RS20065 Genome accession   NC_017046
Coordinates   4127005..4128525 (-) Length   506 a.a.
NCBI ID   WP_000050214.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Typhimurium str. 798     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4122005..4133525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMN798_RS20055 (UMN798_4234) hdfR 4125687..4126535 (-) 849 WP_001541181.1 HTH-type transcriptional regulator HdfR -
  UMN798_RS20060 (UMN798_4235) maoP 4126642..4126980 (+) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  UMN798_RS20065 (UMN798_4236) comM 4127005..4128525 (-) 1521 WP_000050214.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  UMN798_RS20070 ilvL 4128877..4128975 (+) 99 WP_001311244.1 ilv operon leader peptide -
  UMN798_RS26600 ilvX 4129062..4129112 (+) 51 WP_192930503.1 peptide IlvX -
  UMN798_RS20075 (UMN798_4238) ilvG 4129115..4130761 (+) 1647 WP_001012570.1 acetolactate synthase 2 catalytic subunit -
  UMN798_RS20080 (UMN798_4239) ilvM 4130758..4131021 (+) 264 WP_000983260.1 acetolactate synthase 2 small subunit -
  UMN798_RS20085 (UMN798_4240) ilvE 4131039..4131968 (+) 930 WP_000208528.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54994.16 Da        Isoelectric Point: 8.2132

>NTDB_id=44463 UMN798_RS20065 WP_000050214.1 4127005..4128525(-) (comM) [Salmonella enterica subsp. enterica serovar Typhimurium str. 798]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ESSATVKKRVIAAHERQYRRQKKLNAHLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=44463 UMN798_RS20065 WP_000050214.1 4127005..4128525(-) (comM) [Salmonella enterica subsp. enterica serovar Typhimurium str. 798]
ATGTCACTGGCGATTGTTCATACCCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGTGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAGGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATAAGCAAAGAAGGATGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGCCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAG
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGCCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAACGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATCGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCACCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAGCAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCA
TCTGGAGGGTCGCGAAATCCAAAAATATTGTGTTTTGCATCACGATGACGCCCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTTGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCGCGTCAGCATTTGCAGGAGGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGTTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Vibrio cholerae strain A1552

58.812

99.802

0.587
  comM Glaesserella parasuis strain SC1401

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

57.341

99.605

0.571
  comM Legionella pneumophila str. Paris

47.686

98.221

0.468
  comM Legionella pneumophila strain ERS1305867

47.686

98.221

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.431

Multiple sequence alignment