Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K562_RS04220 Genome accession   NZ_CP053300
Coordinates   890306..890863 (+) Length   185 a.a.
NCBI ID   WP_012492400.1    Uniprot ID   -
Organism   Burkholderia cenocepacia strain K56-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 885306..895863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K562_RS04210 (K562_10854) uvrA 885869..888754 (-) 2886 WP_006483142.1 excinuclease ABC subunit UvrA -
  K562_RS04215 (K562_10855) - 889019..890206 (+) 1188 WP_006483141.1 MFS transporter -
  K562_RS04220 (K562_10856) ssb 890306..890863 (+) 558 WP_012492400.1 single-stranded DNA-binding protein Machinery gene
  K562_RS04225 (K562_10857) mug 890986..891516 (+) 531 WP_006491045.1 G/U mismatch-specific DNA glycosylase -
  K562_RS04230 (K562_10858) - 891503..892126 (+) 624 WP_034178637.1 DNA-3-methyladenine glycosylase -
  K562_RS04235 (K562_10859) - 892228..892992 (+) 765 WP_006491044.1 ParA family protein -
  K562_RS04240 (K562_10860) phaP 893490..894074 (+) 585 WP_006491043.1 TIGR01841 family phasin -
  K562_RS04245 (K562_10861) - 894363..895556 (+) 1194 WP_012492402.1 acetyl-CoA C-acetyltransferase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18799.54 Da        Isoelectric Point: 5.3476

>NTDB_id=443994 K562_RS04220 WP_012492400.1 890306..890863(+) (ssb) [Burkholderia cenocepacia strain K56-2]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVAEQMQMLGGRGGSGGGGGGGDEGGYGGGYGGGGGGGRGEQAERGGGGRAGGGGAARGGA
GGGGQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=443994 K562_RS04220 WP_012492400.1 890306..890863(+) (ssb) [Burkholderia cenocepacia strain K56-2]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGCGAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ATCGCGTCGCGTTCTTCGGCCGTCTGGCGGAAATCGTCAGCGAGTACCTGAAGAAGGGTTCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAGGGCCAGGACGGCCAGGACCGTTACTCGACCGAAATCGTCGCCGAACAGATGCAGAT
GCTCGGCGGCCGCGGCGGTTCGGGCGGCGGCGGTGGCGGCGGTGACGAAGGCGGTTATGGCGGCGGCTACGGTGGTGGTG
GTGGCGGCGGTCGCGGCGAGCAGGCGGAGCGTGGCGGCGGCGGTCGTGCCGGCGGCGGCGGCGCGGCGCGTGGCGGTGCG
GGTGGTGGCGGCCAGAGCCGTCCGAGCGCACCGGCAGGCGGCGGCTTCGACGAGATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.223

100

0.514
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.476
  ssb Neisseria meningitidis MC58

42.391

99.459

0.422
  ssb Neisseria gonorrhoeae MS11

42.391

99.459

0.422
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.757

100

0.368