Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HMI62_RS23170 Genome accession   NZ_CP053286
Coordinates   4811922..4812452 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain FZSF02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4806922..4817452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMI62_RS23140 (HMI62_23160) - 4807992..4808399 (-) 408 WP_015379207.1 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein -
  HMI62_RS23145 (HMI62_23165) - 4808447..4809115 (-) 669 WP_171404463.1 glutathione S-transferase -
  HMI62_RS23150 (HMI62_23170) - 4809112..4809555 (-) 444 WP_033644432.1 lipocalin-like domain-containing protein -
  HMI62_RS23155 (HMI62_23175) - 4809751..4810011 (+) 261 WP_042785456.1 YdgH/BhsA/McbA-like domain containing protein -
  HMI62_RS23160 (HMI62_23180) - 4810066..4810983 (-) 918 WP_171404464.1 LysR family transcriptional regulator -
  HMI62_RS23165 (HMI62_23185) - 4811110..4811859 (+) 750 WP_171404465.1 3-oxoacyl-ACP reductase family protein -
  HMI62_RS23170 (HMI62_23190) ssb 4811922..4812452 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HMI62_RS23175 (HMI62_23195) uvrA 4812730..4815558 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  HMI62_RS23180 (HMI62_23200) - 4815788..4816840 (+) 1053 WP_171404466.1 NAD(P)-dependent alcohol dehydrogenase -
  HMI62_RS23185 (HMI62_23205) maa 4816872..4817429 (-) 558 WP_044030338.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=443886 HMI62_RS23170 WP_004936793.1 4811922..4812452(-) (ssb) [Serratia marcescens strain FZSF02]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=443886 HMI62_RS23170 WP_004936793.1 4811922..4812452(-) (ssb) [Serratia marcescens strain FZSF02]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364