Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   C528_RS00010 Genome accession   NZ_CP053256
Coordinates   1589..3019 (+) Length   476 a.a.
NCBI ID   WP_001917140.1    Uniprot ID   A0AAE7DUE0
Organism   Helicobacter pylori A45     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C528_RS00005 (C528_000005) dnaA 1..1368 (+) 1368 WP_001917141.1 chromosomal replication initiator protein DnaA -
  C528_RS00010 (C528_000010) comH 1589..3019 (+) 1431 WP_001917140.1 hypothetical protein Machinery gene
  C528_RS00020 (C528_000020) - 3200..3952 (+) 753 WP_001917138.1 exodeoxyribonuclease III -
  C528_RS00025 (C528_000025) - 3949..4584 (-) 636 WP_108364174.1 outer membrane protein -
  C528_RS00030 (C528_000030) - 4588..4935 (-) 348 WP_000837036.1 hypothetical protein -
  C528_RS00035 (C528_000035) recG 5017..6882 (+) 1866 WP_001917135.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 54585.65 Da        Isoelectric Point: 7.0006

>NTDB_id=443758 C528_RS00010 WP_001917140.1 1589..3019(+) (comH) [Helicobacter pylori A45]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEVHAHQMPSLNAPMQKPQNKPSSSQQSPQKFSYPESKLGSKNSKNSLLQPL
AIPSKISPTNEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNDTSNADINESNENRDNVEKQAIRDPNIKEFACGK
WVYDDENLQAYRPSILKRVDEDRQTATDITPCDYSHAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQARSST
EKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITQNELNLN
EKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=443758 C528_RS00010 WP_001917140.1 1589..3019(+) (comH) [Helicobacter pylori A45]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTCTAGAAGA
AATCAAAACTTCACCACATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATCGTTTTTTCTTCAAAAGA
ATTGAAAGAAGTGCACGCACACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAGCCTAGTTCATCGC
AACAATCTCCTCAAAAATTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAATAAGTCCCACTAACGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACGACACCTCTAACGCTGATATTA
ATGAAAGCAATGAGAATAGGGACAATGTGGAAAAACAAGCGATTAGAGATCCTAATATTAAAGAATTTGCATGCGGGAAG
TGGGTTTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAGACAGACTGCGAC
AGATATTACCCCTTGCGATTATAGCCACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACCAAAATCTCTGTTC
ATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAATAATTTCGCCATTCTTCAAGCCAGAAGTTCTACG
GAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACAAGC
ATGGGAGAGTGAGTATGAAATCACCACGCAATTAGTAAAAGCCATTTATGAGCGCCCCAAACAAGACGATCAAATAGAGC
CAACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCAAAACGAATTGAATTTGAAT
GAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATTAAAGAAAGCAGTGAATATAAAGA
ATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAACAACCACGAGCCAAAAGCA
CGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

95.198

100

0.958