Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FRAAU_RS00450 Genome accession   NC_017033
Coordinates   99421..100923 (+) Length   500 a.a.
NCBI ID   WP_014401598.1    Uniprot ID   H8KZT1
Organism   Frateuria aurantia DSM 6220     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 94421..105923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRAAU_RS00415 (Fraau_0085) - 94587..95279 (-) 693 WP_014401591.1 hypothetical protein -
  FRAAU_RS00420 (Fraau_0086) - 95350..96276 (-) 927 WP_052317748.1 alpha/beta hydrolase -
  FRAAU_RS00425 (Fraau_0087) - 96252..96596 (-) 345 WP_014401593.1 helix-turn-helix domain-containing protein -
  FRAAU_RS00430 (Fraau_0088) - 96691..97437 (+) 747 WP_014401594.1 glucose 1-dehydrogenase -
  FRAAU_RS00435 (Fraau_0089) gpmA 97549..98295 (+) 747 WP_014401595.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  FRAAU_RS00440 (Fraau_0090) - 98411..98941 (+) 531 WP_014401596.1 CcdC protein domain-containing protein -
  FRAAU_RS00445 (Fraau_0091) - 99070..99333 (+) 264 WP_014401597.1 accessory factor UbiK family protein -
  FRAAU_RS00450 (Fraau_0092) comM 99421..100923 (+) 1503 WP_014401598.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FRAAU_RS00455 (Fraau_0093) - 100926..101858 (-) 933 WP_014401599.1 alpha/beta hydrolase -
  FRAAU_RS00460 (Fraau_0094) - 102003..103793 (+) 1791 WP_014401600.1 sodium:proton antiporter -
  FRAAU_RS00465 (Fraau_0095) aceA 103956..105260 (-) 1305 WP_014401601.1 isocitrate lyase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52868.01 Da        Isoelectric Point: 8.3903

>NTDB_id=44309 FRAAU_RS00450 WP_014401598.1 99421..100923(+) (comM) [Frateuria aurantia DSM 6220]
MSLAQVHSRAQLGIQAPSVRVEVHTAGGLPATQIVGLPEAAVREARDRVRVAILSAAFDYPSRRITVNLAPAELPKEGGR
YDLAIALGILAATGQLPAGGLADCEFLGELSLSGRLRPVTGVLPALLAAREAGRRAVVPTCNAAEASLLEDVDVHVADHL
GAVCGWLRGETSLPRPAEVAGARPVRSPDIPDLVDVRGQPLARRALELAAAGGHHLLFSGPPGSGKTMLAERLPGILPPL
QPHERIEVVALRSVAGLAPAEVMTACRPFRHPHHSASAVAMVGGGSHPQPGEISLADHGVLFLDELPEFSRHVLESLREP
LESGHIVIARAAQRVSFPARFQLVAAMNPCPCGHAGDGSSRCHCTPAQIRHYRAKLSGPLLDRLDLVVQVPAVDLAALLG
PAAARGESSSQVRARVVAARELAMQRAGCINAGLAGTALDRCCVLAVADRGWLTRAMQQLGLSARSYHRILRLARTIADL
EPCETLQRSHLAEAIGYRWR

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=44309 FRAAU_RS00450 WP_014401598.1 99421..100923(+) (comM) [Frateuria aurantia DSM 6220]
ATGAGTCTGGCCCAGGTCCACAGCCGTGCGCAGTTGGGCATCCAGGCGCCGTCGGTACGGGTCGAGGTCCATACCGCGGG
TGGTCTGCCCGCGACCCAGATCGTCGGTCTGCCCGAGGCGGCGGTCCGCGAGGCGCGTGATCGGGTAAGAGTGGCCATTC
TCAGCGCGGCCTTCGACTATCCCAGCCGCCGCATCACGGTGAATCTGGCGCCGGCCGAACTGCCCAAGGAGGGAGGCCGC
TATGATCTGGCCATTGCCCTGGGCATTCTGGCCGCGACCGGCCAGTTGCCGGCCGGCGGTCTGGCGGATTGCGAATTTCT
CGGTGAACTCTCCTTGTCAGGCCGGTTGCGGCCGGTGACCGGCGTGCTGCCGGCCCTGCTGGCCGCCCGCGAAGCCGGCC
GGCGGGCCGTGGTACCGACCTGCAATGCGGCGGAGGCCAGCTTGCTGGAGGATGTGGACGTCCATGTCGCCGATCATCTG
GGCGCGGTCTGCGGCTGGCTGCGTGGCGAGACTTCGCTGCCGCGCCCGGCCGAGGTTGCCGGCGCCAGGCCAGTCCGGTC
ACCGGACATCCCCGATCTGGTCGATGTGCGCGGGCAGCCACTGGCCCGGCGGGCGCTGGAGCTTGCCGCGGCAGGCGGTC
ATCATCTGCTGTTCAGTGGTCCGCCTGGCAGCGGCAAGACCATGCTGGCCGAACGCCTGCCCGGCATTCTGCCGCCGCTG
CAGCCGCATGAGCGAATCGAGGTGGTGGCCTTGCGCTCGGTGGCGGGCCTGGCTCCGGCCGAGGTGATGACCGCCTGCCG
CCCGTTCCGCCATCCGCATCACAGTGCCTCGGCGGTGGCCATGGTCGGTGGCGGCAGTCATCCGCAGCCGGGCGAGATTT
CGCTGGCTGATCACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCAGTCGGCATGTGCTGGAGTCGTTGCGCGAACCG
CTGGAATCGGGCCATATCGTGATCGCCCGCGCGGCCCAGCGGGTCAGCTTTCCGGCCCGCTTCCAGCTGGTGGCCGCGAT
GAACCCTTGCCCCTGCGGCCATGCCGGCGACGGCAGTTCGCGCTGTCATTGCACGCCGGCCCAGATCCGGCATTACCGGG
CCAAGCTGTCCGGCCCGCTGCTGGATCGGCTGGACCTGGTGGTGCAGGTGCCGGCGGTGGACCTGGCCGCCCTGCTGGGC
CCGGCCGCGGCGCGCGGGGAAAGCTCGTCCCAGGTGCGGGCCCGGGTGGTGGCGGCGCGCGAGTTGGCGATGCAGCGTGC
CGGCTGCATCAATGCCGGCCTGGCGGGGACGGCGCTCGATCGCTGCTGCGTCCTGGCGGTCGCTGATCGCGGCTGGCTGA
CCCGGGCCATGCAGCAGCTTGGCCTCAGTGCCCGCAGCTATCACCGCATTCTGCGTCTGGCCCGGACCATTGCCGACCTG
GAACCCTGCGAGACCCTGCAGCGCAGCCATCTGGCCGAGGCCATCGGCTATCGCTGGCGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8KZT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.4

100

0.524
  comM Glaesserella parasuis strain SC1401

51.793

100

0.52
  comM Vibrio cholerae strain A1552

50.595

100

0.51
  comM Vibrio campbellii strain DS40M4

50.397

100

0.508
  comM Legionella pneumophila str. Paris

48.008

100

0.482
  comM Legionella pneumophila strain ERS1305867

48.008

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.158

100

0.446

Multiple sequence alignment