Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HHM66_RS00870 Genome accession   NZ_CP053074
Coordinates   139712..140107 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 134712..145107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM66_RS00840 (HHM66_00840) - 135293..135730 (+) 438 WP_012766452.1 hypothetical protein -
  HHM66_RS00845 (HHM66_00845) proC 135869..136645 (-) 777 WP_014611934.1 pyrroline-5-carboxylate reductase -
  HHM66_RS00850 (HHM66_00850) pepA 136692..137759 (-) 1068 WP_012766453.1 glutamyl aminopeptidase -
  HHM66_RS00855 (HHM66_00855) - 138318..138602 (+) 285 WP_003055815.1 DUF4651 domain-containing protein -
  HHM66_RS00860 (HHM66_00860) - 138599..138916 (+) 318 WP_003055817.1 thioredoxin family protein -
  HHM66_RS00865 (HHM66_00865) ytpR 138934..139560 (+) 627 WP_003062450.1 YtpR family tRNA-binding protein -
  HHM66_RS00870 (HHM66_00870) ssbA 139712..140107 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  HHM66_RS00875 (HHM66_00875) - 140367..141008 (-) 642 WP_065957568.1 deoxynucleoside kinase -
  HHM66_RS00880 (HHM66_00880) dusB 141028..142005 (-) 978 WP_065957569.1 tRNA dihydrouridine synthase DusB -
  HHM66_RS00885 (HHM66_00885) hslO 141992..142864 (-) 873 WP_014611939.1 Hsp33 family molecular chaperone HslO -
  HHM66_RS00890 (HHM66_00890) rofA 143011..144504 (-) 1494 WP_065957571.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=442756 HHM66_RS00870 WP_003053955.1 139712..140107(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=442756 HHM66_RS00870 WP_003053955.1 139712..140107(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTGGCTAAACCAGAATTGGTAAAAACCGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCGGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397